RNA id: TU889


Basic Information

Item Value
RNA id TU889
length 381
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G742
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 4483890 ~ 4484270 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACAACAGGCAAGAAGCAAAGGTATTCATAGTTTATTTACACGAGGTGTCATTCTGTGGTAACATGGTAAAGCATGAAGCTGACGCTGAACTGAAGACAGAAACTCACCTTGagaattatataatttccagcctgttttggaataattgagtaATGGCTGCTCTTGCTAATATACATCAAGCCTATAATCAGGGCCTGCCCtgcttgttgtgtgtgtggttttaccTCATGCTCGCACTTCTACCTCTTACCTGGCATAGCAGGGCAGTCCTGGTGAAAACATCCTTCACAGCATCTCACTAAACGAAGAATCCCTCTCCATAAACACTCACACGTCAACTCATTGCTTCAGAAACAGGTTTATTGAGCTGGGAGTTCTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU878 lncRNA upstream 28748 4452564 ~ 4455142 (+) True AMCG00003473
TU830 lncRNA upstream 104071 4326653 ~ 4379819 (+) True G690
TU824 lncRNA upstream 108951 4296559 ~ 4374939 (+) True G684
TU778 lncRNA upstream 393571 4086896 ~ 4090319 (+) True G646
TU774 lncRNA upstream 507851 3975753 ~ 3976039 (+) True G642
TU893 lncRNA downstream 31078 4515348 ~ 4520633 (+) True AMCG00003469
TU905 lncRNA downstream 68628 4552898 ~ 4553645 (+) True G752
TU992 lncRNA downstream 848239 5332509 ~ 5334752 (+) False AMCG00003480
TU1087 lncRNA downstream 1066475 5550745 ~ 5556306 (+) True G907
TU1088 lncRNA downstream 1073337 5557607 ~ 5558515 (+) True G908
AMCG00003474 mRNA upstream 12159 4471337 ~ 4471731 (+) True AMCG00003474
AMCG00003473 mRNA upstream 30337 4452949 ~ 4453553 (+) False AMCG00003473
AMCG00003467 mRNA upstream 48423 4427711 ~ 4435467 (+) True AMCG00003467
AMCG00003465 mRNA upstream 117658 4350519 ~ 4366232 (+) True AMCG00003465
AMCG00003463 mRNA upstream 193942 4280112 ~ 4289948 (+) True AMCG00003463
AMCG00003469 mRNA downstream 29761 4514031 ~ 4522400 (+) False AMCG00003469
AMCG00003468 mRNA downstream 57373 4541643 ~ 4543761 (+) True AMCG00003468
AMCG00003475 mRNA downstream 205214 4689484 ~ 4695337 (+) True AMCG00003475
AMCG00003478 mRNA downstream 690745 5175015 ~ 5187273 (+) True AMCG00003478
AMCG00003480 mRNA downstream 819180 5303450 ~ 5334288 (+) True AMCG00003480
TU1202 other downstream 2003422 6487692 ~ 6494905 (+) True G1012
TU1569 other downstream 4164855 8649125 ~ 8652404 (+) True AMCG00003534
TU1763 other downstream 4771558 9255828 ~ 9263468 (+) True AMCG00003551
TU1883 other downstream 5293238 9777508 ~ 9780902 (+) True AMCG00003570
TU2334 other downstream 7005915 11490185 ~ 11491443 (+) False AMCG00003606

Expression Profile