RNA id: TU9000



Basic Information


Item Value
RNA id TU9000
length 801
RNA type TUCP
GC content 0.45
exon number 4
gene id G7329
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 42688779 ~ 42691109 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tataGCAGGTTCAGGTAGTTTATTCAGTCTGTTGTGCACAGGTTCACAAATGAGAATTTAAGTACAAAACCAAATAGAAGTGCGTAACAGATTTTGATAtaaaagttgcttataaaaacatttttttccaactcATGTTATAAAACATTTGGGCAGATGAAGTGCAAATCTATGCAAACAGTAAACGACAACATCAAATACGATTGCTGTCTGCAGTCCAGCGGGCAGGACTGAAATGGTCCCATGAGACAGAGAGCTTTGAGCAGACCTTATGCCTTCTCATAAGTACGCACTGCCTGGACATCACCGAAAGACAGATCATGATCAATTTGCCGTCCTTGATCTCTCTGACAAACTTGGTCTCCTTGCCGTCCCACTTCTGCACATGCACCAGCTTGTCTCCGTCCATGGATACAGTGGATTGCAGTTCCTGTCGTCTGCAGTAGATTCATCGAACTCCTCTCCAAGTTTGAAGgaaatttctgtatttttgaaagtaCTCTGCGTTTTTACAACAACCTTGTCTCCATCCTGGCTGATGATGATAGTGGGTTTAGTGACGTTGCCGACTTGTCTTGTTGCAAAACCAACCCCCAGCGCTTTCATGTACTCGTCAAAGTTCTGACTGTCGACCAGTTTCCAGGTGGCACAGAAGGCGTCGACCATGGTTGCAGATGTAAGGAAATGCTGGGAGCAGAAGTGCTGAGGTAAAGGTTGATATGAAGTTGCTCAGAGGTACAGTATCTGTATGCAGCGTCCCTGGGCAATATCGCGCTGTCTATCATTAATACCCGGGGAGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU8944 lncRNA upstream 212893 42475576 ~ 42475886 (+) True G7293
TU8939 lncRNA upstream 308818 42376625 ~ 42379961 (+) True G7288
TU8928 lncRNA upstream 323125 42364868 ~ 42365654 (+) True G7278
TU8918 lncRNA upstream 352136 42333425 ~ 42336643 (+) True G7272
TU8872 lncRNA upstream 599126 42087791 ~ 42089653 (+) True G7231
TU9117 lncRNA downstream 544709 43235818 ~ 43237653 (+) True G7418
TU9148 lncRNA downstream 655241 43346350 ~ 43346959 (+) True G7441
TU9208 lncRNA downstream 900641 43591750 ~ 43595078 (+) True G7485
TU9307 lncRNA downstream 1387236 44078345 ~ 44081355 (+) False G7569
TU9305 lncRNA downstream 1391989 44083098 ~ 44088037 (+) True G7569
AMCG00004315 mRNA upstream 53811 42591866 ~ 42634968 (+) True AMCG00004315
AMCG00004314 mRNA upstream 112221 42548340 ~ 42576558 (+) True AMCG00004314
AMCG00004308 mRNA upstream 333379 42350231 ~ 42355400 (+) True AMCG00004308
AMCG00004309 mRNA upstream 341697 42338514 ~ 42347082 (+) True AMCG00004309
AMCG00004305 mRNA upstream 429038 42220020 ~ 42259741 (+) True AMCG00004305
AMCG00004318 mRNA downstream 41707 42732816 ~ 42736569 (+) True AMCG00004318
AMCG00004321 mRNA downstream 235959 42927068 ~ 42975785 (+) True AMCG00004321
AMCG00004326 mRNA downstream 422575 43113684 ~ 43114271 (+) True AMCG00004326
AMCG00004328 mRNA downstream 465959 43157068 ~ 43177059 (+) True AMCG00004328
AMCG00004327 mRNA downstream 524997 43216106 ~ 43234293 (+) True AMCG00004327
TU8899 other upstream 472417 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 1181548 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 5688621 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 5797033 36861547 ~ 36891746 (+) True G6328
TU7741 other upstream 5914256 36774001 ~ 36774523 (+) True G6314
TU9559 other downstream 3270901 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 5455779 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 6241341 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 7460155 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 8052682 50743791 ~ 50753349 (+) False AMCG00004477

Expression Profile