RNA id: TU9117


Basic Information

Item Value
RNA id TU9117
length 1836
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G7418
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 43235818 ~ 43237653 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGCATCCCCGCATTTCCTATACGCAAGAAAATACATCCTCTCTGAGAGATCCTGGACTTCTCGTGGCTCGTATTAGTGAGGGGACTCGAGTTCCTGCTTATTTCATCCCATCTTCCCAAGAATGTAAATTGTTTGTGCCACTTATATTGATCATTTTATCAACAACTAAgccatttacatgtattttcagCAGATGTAGGTGTGCTTTGTTCTGTCAGATGTCGATTTCAGAGAGTTTTTGCTTCACAACTGAGCAGTGTTAAGtgtctgttattttgttttaggaCAGTCGTGGGTGGTGGTAATTAATCAAGTTGGGTTTATATTGTACTTTCTGTTTTAtgcaaattattgtttttaatttatttgaatgcacATAGGTTTAGTTCGGAGTACCTTTGGTGGGTTTCCCTTTGGAAGGTGTGTTAAAGTTTATCACCGTCTTAATGGTGAGTGCAGAGGGAAGTGTCAATTTAATGAACGAATGTCAGTGCAAATGACTCTTCAAATGTGAAACTGAATGGaattttgcctttttaattttctctctatctctctctttcctaGAAAGCACAAAATGctggttttcttatttttattaatcgTGGTTTGTCATAGGAAGGTATTCTAGTCAGTTTAAAATAAGCACAAGCAGGAATTATAACACGAAACGTATAAAAAAGATGCAAGGAGAGTAAGTACTTAAACTGTCGCTGTTCTACACTGGATTAACTGTTAAATTATTCCAATATATGCTGTGTAAAAGACATGGTAATATATGCTGAGGGGCAATAAAACTCTTAAACCTCCTCTGGGCTCTTTAACTCAAGCACTGACCGCAGACTGAGCGGGCCTCGAGCCACAGGCATGATACTCAGAAACATAACAGACATCTGACTTAAGTCAAAGCATAGTTAGTCGGTGCAGGTGCTGTGTTACCTCTGGGGAAGATTACAGCCTCACATCTCCCGTTTTTGGGGTGtttcttttgacatttttaatgaaaataattggttttatttgttgtggTTAGTTTTATGCATCATTGAATGTACAGTACATGCAGTTATTTTAGTCATCCTCGGTTTGTTTCCCGTGTAAATGTACTGTCTCGGAAGGTATTCTGTGTTCACGAGGTGTAATGCGGAGGTCAGCCCTGCGTACTGCCAGCCGTGCTGCATCAGTTGCTGTTCTTCACTGGAAGGGAAGAGGTTACTGTTCTTGCTCTATAACAGTGTCTCGTCagtgtgtttttgattttctcattttcatatttcatatttaatccttttatttttggatGTTCCTTTAAAGGCATCTTTTACTGGATAATCACCTCATGAAACAGGTCtcgagtgatattaaaatattgcatgCAGGGGTGAACTGCTGAATGAGCCTGGGAGTTATTGGCagataaactgaaaatattgttCTATAATGCACATTAACAAGTCATTTCCTTGCAtctttgttgaaaataaaaacagaaagtgtgcttttaatttcaaattgaacGTAAAGAGGAATCCTACGTGAAGAAGCCTTTTTTGTGTGAACTCGTTTATGGTTTGTGACAAGATGTAACTGTACAAAATTGCTGATAATCATTCCATTGTCTTTTTGTTGATATGCAATTTAATCTGTggggattgtttttgtttgtttgttttcctgtttttaaaatgtacatattccaTACAGGCAAATATGcctacatttatataaatcctATGACGTTACTGACTAAATGATAAAAATGAGCTGCAaaatttttaataattatatttgttacaCTTCTATTGTGAATAAAGAAaatcttttattatattttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU8944 lncRNA upstream 759932 42475576 ~ 42475886 (+) True G7293
TU8939 lncRNA upstream 855857 42376625 ~ 42379961 (+) True G7288
TU8928 lncRNA upstream 870164 42364868 ~ 42365654 (+) True G7278
TU8918 lncRNA upstream 899175 42333425 ~ 42336643 (+) True G7272
TU8872 lncRNA upstream 1146165 42087791 ~ 42089653 (+) True G7231
TU9148 lncRNA downstream 108697 43346350 ~ 43346959 (+) True G7441
TU9208 lncRNA downstream 354097 43591750 ~ 43595078 (+) True G7485
TU9307 lncRNA downstream 840692 44078345 ~ 44081355 (+) False G7569
TU9305 lncRNA downstream 845445 44083098 ~ 44088037 (+) True G7569
TU9326 lncRNA downstream 1098798 44336451 ~ 44336681 (+) True G7584
AMCG00004327 mRNA upstream 1525 43216106 ~ 43234293 (+) True AMCG00004327
AMCG00004328 mRNA upstream 58759 43157068 ~ 43177059 (+) True AMCG00004328
AMCG00004326 mRNA upstream 121547 43113684 ~ 43114271 (+) True AMCG00004326
AMCG00004321 mRNA upstream 260033 42927068 ~ 42975785 (+) True AMCG00004321
AMCG00004318 mRNA upstream 499249 42732816 ~ 42736569 (+) True AMCG00004318
AMCG00004331 mRNA downstream 57999 43295652 ~ 43317408 (+) True AMCG00004331
AMCG00004330 mRNA downstream 91719 43329372 ~ 43338860 (+) True AMCG00004330
AMCG00004329 mRNA downstream 113126 43350779 ~ 43362687 (+) True AMCG00004329
AMCG00004332 mRNA downstream 143017 43380670 ~ 43411096 (+) True AMCG00004332
AMCG00004335 mRNA downstream 289327 43526980 ~ 43534658 (+) True AMCG00004335
TU9000 other upstream 544709 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 1019456 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 1728587 41459576 ~ 41507231 (+) True G7094
TU7800 other upstream 6235660 36999357 ~ 37000158 (+) True G6369
TU7756 other upstream 6344072 36861547 ~ 36891746 (+) True G6328
TU9559 other downstream 2724357 45962010 ~ 45968306 (+) True AMCG00004380
TU9841 other downstream 4909235 48146888 ~ 48147156 (+) True G7999
TU9962 other downstream 5694797 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 6913611 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 7506138 50743791 ~ 50753349 (+) False AMCG00004477

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00036945 True 4416 lncRNA 0.37 2 NC_007131.7 41237704 ~ 41242669 (-)