RNA id: TU915


Basic Information

Item Value
RNA id TU915
length 1401
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G762
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 4545898 ~ 4547298 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGATTACAATTTCTCCATACAGTTCAAACCTAACAgtatgaaaacatgtatttttgttattattgttactcTCATGATTATGTATAGGTTTGAACTGAAAACCAGGGCAACATGCAACGTGTCAGTAGGCAGTATTTAACACACATGCTGAAGTTACAAGTTTGAGGAGATTTATCCCTACAGAATATATACAACCCTCCTCACTATGAATGGATATTGTAATTAGCCAGTACTTGAAAGTGTTGATGACTTATTTATTCTCCAGATCAGTTTCATTCACACAGCTTGTTTGCCATTCTGAGGAGTCTGACCCTAGCAGCGATAGGTTCACCATATTTCATGAATTTCGCGAAGCCTTTGTTGAGTGACAAAATGTACTTTGCAGTTTTTCTTGACTTGTAATAATGAACAGCAGATTTGTAAGTCTATAACTACCGTACTCTATCTTTGTAGTGCTTTACAAGAACTGATGCcaaaacaaagcattcaaaACTATGATGTCAATGCAGGTTATGACAATGTTGAAGAAATACACCAAGAATGTACTAACAATGTGTTACGAATTATGgttagtttatattttttaatgaatataggTGAATGCACTCAGCACTTATGATGCTGTTgtagttattgttattgttgttttctgtttggttttgtaACAAAAGAGGTCGATCTTAACGCTAGCCTGCTAGCCACTGGCTAGTGCAGATCGCTGTGGGCCAGTACAGATTCTCTAGAACTAGTCCGTGTGGCTAGTGCATATTATCTTACGTTTTAGAGCTGTTAAGATTGAAATctacagattttaaaacaacaagctTATGATCGGATCAGAGGGCAAACGATGGCATTGTAGCTAGTCtcacactacacgaccatcggTAGCATGGACGGGCCCCAACCAGGCTGCTAGTcatgacgatcagtgccgatttGTCGTCAGGGCAAATCGGGCTCAAATcaggcttaaaatcgtgtagtgtgaccatAAATGTACTGGAAACGATCGCTACTCGCACATGTCAAGGTGTAATCTAATGCACCACTTGCAGCAGAcgacttcttaataataaatattacagttcAGCCCAAATGGCAGCTGGAATTTGAATATTCTGTAtttcatgtgttttaagtgGTATTGTTCAAATACAGCACATTTGGAAGCCTGAATGATGCAGCAAATTGACAAAACATTGAGTGACAGtgagtgcaaattaaattagaaaaccTAACTCATGCATCAGGTGGTTaagttcaaacattttttaaccTTGAAGCATTCCATTTACAAAGCAGTAAGCAGGTGAAAATCATACACTcagttgtataaaataaaatgacaggaaTTTTCACAGGCACCCAACAGAAATACTTCCACTGGGTTATATTGG

Function

GO: NA

KEGG:

id description
ko00600 Sphingolipid metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU896 lncRNA downstream 24881 4520815 ~ 4521017 (-) True G748
TU891 lncRNA downstream 59872 4485607 ~ 4486026 (-) True G744
TU890 lncRNA downstream 60333 4483516 ~ 4485565 (-) True G743
TU851 lncRNA downstream 219048 4282149 ~ 4326850 (-) True G708
TU850 lncRNA downstream 229614 4281825 ~ 4316284 (-) True G707
TU933 lncRNA upstream 232548 4779846 ~ 4783376 (-) True G777
TU944 lncRNA upstream 434721 4982019 ~ 4982220 (-) True G786
TU962 lncRNA upstream 584169 5131467 ~ 5131701 (-) True G804
TU969 lncRNA upstream 585402 5132700 ~ 5140245 (-) True G811
TU1008 lncRNA upstream 782274 5329572 ~ 5329774 (-) True G844
AMCG00003470 mRNA downstream 22900 4521548 ~ 4522998 (-) True AMCG00003470
AMCG00003466 mRNA downstream 141256 4376892 ~ 4404642 (-) True AMCG00003466
AMCG00003462 mRNA downstream 221920 4299905 ~ 4323978 (-) True AMCG00003462
AMCG00003460 mRNA downstream 310246 4218169 ~ 4235652 (-) True AMCG00003460
AMCG00003464 mRNA downstream 333996 4209747 ~ 4211902 (-) True AMCG00003464
AMCG00003472 mRNA upstream 315 4547613 ~ 4553234 (-) True AMCG00003472
AMCG00003471 mRNA upstream 15103 4562401 ~ 4565560 (-) True AMCG00003471
AMCG00003476 mRNA upstream 35844 4583142 ~ 4808989 (-) True AMCG00003476
AMCG00003477 mRNA upstream 332522 4879820 ~ 5154595 (-) True AMCG00003477
AMCG00003479 mRNA upstream 643251 5190549 ~ 5225471 (-) True AMCG00003479
TU643 other downstream 1115626 3394657 ~ 3430272 (-) True G531
TU462 other downstream 2107077 2437727 ~ 2438821 (-) False AMCG00003422
TU425 other downstream 2144003 2397642 ~ 2401895 (-) False AMCG00003423
TU920 other upstream 103473 4650771 ~ 4661367 (-) False AMCG00003476
TU1027 other upstream 798541 5345839 ~ 5356468 (-) True AMCG00003484
TU2164 other upstream 6403878 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 6556028 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 7376510 11923808 ~ 11939783 (-) True AMCG00003623

Expression Profile