RNA id: TU933


Basic Information

Item Value
RNA id TU933
length 543
lncRNA type intronic
GC content 0.39
exon number 2
gene id G777
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 4779846 ~ 4783376 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggcatcaacaaggcattttcgcccacaggactgccgcatactggatgtttttcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagacctgcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaagagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatatacagtactgtgcaaacgttttaggcaggtatgatgtggatttaggcagcctcagttgcttctctctcttcatgtaatcccagacagactcgatgatgttgagatcagggctctgtgggggccataccatcacttccaggactccttgttcttctttacgctgaagatagttcttaatgactgtcgctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU915 lncRNA downstream 232548 4545898 ~ 4547298 (-) True G762
TU896 lncRNA downstream 258829 4520815 ~ 4521017 (-) True G748
TU891 lncRNA downstream 293820 4485607 ~ 4486026 (-) True G744
TU890 lncRNA downstream 294281 4483516 ~ 4485565 (-) True G743
TU851 lncRNA downstream 452996 4282149 ~ 4326850 (-) True G708
TU944 lncRNA upstream 198643 4982019 ~ 4982220 (-) True G786
TU962 lncRNA upstream 348091 5131467 ~ 5131701 (-) True G804
TU969 lncRNA upstream 349324 5132700 ~ 5140245 (-) True G811
TU1008 lncRNA upstream 546196 5329572 ~ 5329774 (-) True G844
TU1009 lncRNA upstream 547350 5330726 ~ 5334758 (-) True G845
AMCG00003471 mRNA downstream 214286 4562401 ~ 4565560 (-) True AMCG00003471
AMCG00003472 mRNA downstream 226612 4547613 ~ 4553234 (-) True AMCG00003472
AMCG00003470 mRNA downstream 256848 4521548 ~ 4522998 (-) True AMCG00003470
AMCG00003466 mRNA downstream 375204 4376892 ~ 4404642 (-) True AMCG00003466
AMCG00003462 mRNA downstream 455868 4299905 ~ 4323978 (-) True AMCG00003462
AMCG00003477 mRNA upstream 96444 4879820 ~ 5154595 (-) True AMCG00003477
AMCG00003479 mRNA upstream 407173 5190549 ~ 5225471 (-) True AMCG00003479
AMCG00003484 mRNA upstream 560694 5344070 ~ 5356468 (-) False AMCG00003484
AMCG00003482 mRNA upstream 574210 5357586 ~ 5358050 (-) True AMCG00003482
AMCG00003483 mRNA upstream 577711 5361087 ~ 5373418 (-) True AMCG00003483
TU920 other downstream 118479 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 1349574 3394657 ~ 3430272 (-) True G531
TU462 other downstream 2341025 2437727 ~ 2438821 (-) False AMCG00003422
TU425 other downstream 2377951 2397642 ~ 2401895 (-) False AMCG00003423
TU1027 other upstream 562463 5345839 ~ 5356468 (-) True AMCG00003484
TU2164 other upstream 6167800 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 6319950 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 7140432 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 7292662 12076038 ~ 12078152 (-) False AMCG00003625

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU534597 True 6375 lncRNA 0.39 2 CI01000325 5707938 ~ 5714405 (+)