RNA id: TU9363


Basic Information

Item Value
RNA id TU9363
length 644
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G7609
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 44520175 ~ 44520818 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACCAATTGGAAACCTGCTGGGGCTGCCGGGACACCATCTGCCCCTTCATGGGCACTCATGTTTGCAAGAGGGGCAACTGACAATGAGTCAAGAGCACCACCTCACTGCCACTACTGCCACTCTGGAGACAACCTGAGAACAATACAGGCCTGAGAGAAGAGTAGCGtagcagaaaaacactttaGTTTTACATTggatttgttatatatttttattttccttcttctttcttCAGCCTTTtagaatgaataataaatatgtaaacccTGCATTAAACATAAGCAACCTCAGTGTGATAGCACACATTTGAATTTCCATATTatgaaaattgtgaaaattattatcattatttggttgctttattgttattttttaggttattttttcatttgtttcttaacACACCAAGTGCAATACAATAACTAAACAAATGAGCCACAGTATTAAGGCACCTAGAGCTGCATGCTGTATCCTGTTACTGTAGCTTTGCCCAGCGAGCCCCACATCACTGAGTTCACCAGCGTCACGCGCACTGTGTCACATCCCACATAACTTTGTGTGCATCCTATGACACCTGATTTCAATGATAAAGGTTCATACATGGTTCACATTATCTCCATGAAGATCTGTGTTTATTGCCCA

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway
ko05164 Influenza A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9329 lncRNA downstream 111510 44408360 ~ 44408665 (-) True G7587
TU9327 lncRNA downstream 183605 44336271 ~ 44336570 (-) True G7585
TU9325 lncRNA downstream 342187 44177646 ~ 44177988 (-) True G7583
TU9322 lncRNA downstream 430395 44083097 ~ 44089780 (-) True G7580
TU9289 lncRNA downstream 651469 43868463 ~ 43868706 (-) True G7554
TU9388 lncRNA upstream 28564 44549382 ~ 44550322 (-) False AMCG00004364
TU9451 lncRNA upstream 102372 44623190 ~ 44712051 (-) True AMCG00004372
TU9453 lncRNA upstream 102372 44623190 ~ 44712051 (-) False AMCG00004372
TU9460 lncRNA upstream 111934 44632752 ~ 44633282 (-) True G7684
TU9455 lncRNA upstream 187469 44708287 ~ 44709624 (-) False AMCG00004372
AMCG00004366 mRNA downstream 11357 44500874 ~ 44508818 (-) True AMCG00004366
AMCG00004357 mRNA downstream 24413 44487408 ~ 44495762 (-) True AMCG00004357
AMCG00004349 mRNA downstream 409050 44102083 ~ 44111125 (-) True AMCG00004349
AMCG00004350 mRNA downstream 428342 44087376 ~ 44091833 (-) True AMCG00004350
AMCG00004348 mRNA downstream 472937 44015119 ~ 44047238 (-) True AMCG00004348
AMCG00004356 mRNA upstream 4246 44525064 ~ 44527659 (-) True AMCG00004356
AMCG00004361 mRNA upstream 13746 44534564 ~ 44538108 (-) True AMCG00004361
AMCG00004364 mRNA upstream 19345 44540163 ~ 44561575 (-) True AMCG00004364
AMCG00004365 mRNA upstream 40850 44561668 ~ 44568560 (-) True AMCG00004365
AMCG00004362 mRNA upstream 55726 44576544 ~ 44586109 (-) True AMCG00004362
TU8946 other downstream 2140769 42376726 ~ 42379406 (-) True AMCG00004313
TU8320 other downstream 4671052 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 7151353 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 9105729 35354621 ~ 35414446 (-) False AMCG00004143
TU7292 other downstream 9556336 34960960 ~ 34963839 (-) False AMCG00004132
TU9361 other upstream 96 44520914 ~ 44522213 (-) True G7608
TU9683 other upstream 1786108 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 1947307 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 2363817 46884635 ~ 46887337 (-) False AMCG00004398
TU9801 other upstream 2539078 47059896 ~ 47306589 (-) False AMCG00004403

Expression Profile