RNA id: TU944


Basic Information

Item Value
RNA id TU944
length 202
lncRNA type intronic
GC content 0.45
exon number 1
gene id G786
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 4982019 ~ 4982220 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGATAGGAAGAGCCAACATCGAAGGATCAAAAAGCGATGTCGCTATGAACACTTGGTCGCCACAAGCCAGTTATCCCTGTTGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCGGAAGGATCGTGAGGCCCTGCTTTTTGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGTGCATCA

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU933 lncRNA downstream 198643 4779846 ~ 4783376 (-) True G777
TU915 lncRNA downstream 434721 4545898 ~ 4547298 (-) True G762
TU896 lncRNA downstream 461002 4520815 ~ 4521017 (-) True G748
TU891 lncRNA downstream 495993 4485607 ~ 4486026 (-) True G744
TU890 lncRNA downstream 496454 4483516 ~ 4485565 (-) True G743
TU962 lncRNA upstream 149247 5131467 ~ 5131701 (-) True G804
TU969 lncRNA upstream 150480 5132700 ~ 5140245 (-) True G811
TU1008 lncRNA upstream 347352 5329572 ~ 5329774 (-) True G844
TU1009 lncRNA upstream 348506 5330726 ~ 5334758 (-) True G845
TU1029 lncRNA upstream 358241 5340461 ~ 5341987 (-) True G862
AMCG00003476 mRNA downstream 173030 4583142 ~ 4808989 (-) True AMCG00003476
AMCG00003471 mRNA downstream 416459 4562401 ~ 4565560 (-) True AMCG00003471
AMCG00003472 mRNA downstream 428785 4547613 ~ 4553234 (-) True AMCG00003472
AMCG00003470 mRNA downstream 459021 4521548 ~ 4522998 (-) True AMCG00003470
AMCG00003466 mRNA downstream 577377 4376892 ~ 4404642 (-) True AMCG00003466
AMCG00003479 mRNA upstream 208329 5190549 ~ 5225471 (-) True AMCG00003479
AMCG00003484 mRNA upstream 361850 5344070 ~ 5356468 (-) False AMCG00003484
AMCG00003482 mRNA upstream 375366 5357586 ~ 5358050 (-) True AMCG00003482
AMCG00003483 mRNA upstream 378867 5361087 ~ 5373418 (-) True AMCG00003483
AMCG00003486 mRNA upstream 426578 5408798 ~ 5413661 (-) True AMCG00003486
TU920 other downstream 320652 4650771 ~ 4661367 (-) False AMCG00003476
TU643 other downstream 1551747 3394657 ~ 3430272 (-) True G531
TU462 other downstream 2543198 2437727 ~ 2438821 (-) False AMCG00003422
TU425 other downstream 2580124 2397642 ~ 2401895 (-) False AMCG00003423
TU1027 other upstream 363619 5345839 ~ 5356468 (-) True AMCG00003484
TU2164 other upstream 5968956 10951176 ~ 10956335 (-) False AMCG00003586
TU2225 other upstream 6121106 11103326 ~ 11104672 (-) False AMCG00003595
TU2480 other upstream 6941588 11923808 ~ 11939783 (-) True AMCG00003623
TU2508 other upstream 7093818 12076038 ~ 12078152 (-) False AMCG00003625

Expression Profile