RNA id: TU9625


Basic Information

Item Value
RNA id TU9625
length 2184
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G7820
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 46187506 ~ 46189689 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttataaaattttaaataaagagtCTTTGAATAAAACCTTGGACTTCTACAACACAAGACAACACATGGAATTGTCAATAttgtggaaaacaaagaaatattggaaataaaaaataaatatgcccCCAGGCCTAATTCATTTATGAACCATGATTGAAGTTTACTGCTCTACATCGGGCCTGGTGAACCACTTCAGGTAGTTACACAAATTAGCTGtgaatattttttcaaactagacaaaaacacagaactgcagaaCAGGGCTGGGTCTTTCTTgcttggatgtatttatttttccaatttataTTTACcagtttgcatttaaattgaatctACGGTCATTTTGTGCATCATTAGGTCTCATTTCCCAAAATGTGTGCCTTGAGAGTTTTTGTGTAGACTAATGTAGGCACGGATGCATTCAATATTTTAGGTAAAGTTAGTTATGGagccatatttgtatttattaaaacataaactcCTGCTGCTTTGAAGACAGCTTGCACAGAAAAAATGGAATAAGccaaattaaaagtatattacAGAAAACTGAGTTGAGTGATCCCCCCTGAAAATACCACAGGCCTTCTTTAACACATAGGAGACCCTTTGATTCCACCCATGGCCACATGACAGGATTTTGAAGTGGGTCGTGTCTTTATTTGCAGATGACCAAGGTGCTTTGCTGGGGGCCCAGTTTTGCTGCTTTTCACTCCCTATCGTCACCAGAAACCACCAAATTCAATCCTCTTCAGTTCCCAGGCACTATAGGCCGCAAGAAGAATTTGTAAACTAGATGCATCAAGGGTTTAAATTTTTCTCTAAGCACAATAAAGCCACTGGACGACACAGAAAAGCACGGGGAATTTCGAAAGCACAAGTCtttgaacaaaaacagaatacacCTCTCATGCTTTCCGTTAACATTTCTGGTTAACAAACCCTGCTTGGTTAACACAATTTGGTTTCCCATGAACAAACAGCATTTAGGATTCAATACTTCCATAATTTTAGTTGATGTTGCTTGGTTATATTAAACTTCCACTGAATGCTTGGTAATGTAACCAGGAGatgcacaaaaaacaaccaaaggttttcagagaaaaatacaaaaaaaaaactggacaaaaataaaaataaccatgCCAGGTTTCCTTTAACTGTGTAAAAGGCTGAAATGAATAACCTtggaaaaataaagtgtattttgCAACTGCAATTCCCTTCCCATGAAAAGTAAACACAGTAGTAGTTTGTGTGCGTGTTGGTGTAGTGTACTCTTTTTCCAAGAGTAGATAACCAAGGCCAGACTGAATGTTGGgtttcaatatgttttaaacattcatGGGAAACGTATTTTcccaacctttttttttttttacaggaatgTGCATCTTGGCATGTACAAGTGATTTTATTACTGCAACAACCCTaacctgcttttgttttaatcagcaACCTATGGCACTATGAAAAGGTATCCCGTGTCAAGCAAGACTCCTCAATCACACGTTCATATGTATTGGTATTGACCTTGCAAGTGTGATCATGGCCAGAGcagcaggaaataaataaataatgtgaaatacaaaataaaacaaacgtaTAACACCTGTAACCTGCGAGGCGATGTTCACAGAGAAACAGGATCAGCGACATTAgtttttagaaaatgttaaGTGTGTGCAGAGCATTTGACGGAGAAAGCTTCAATAACTATGGGATCCAGTCACCAGACTCTGGACCATAACCTACACTGACGCTTCCTGCTCTGAAGCACGGTTCTTCAGCTCCAGTGCTATTGGTCATTTGTGGAGCAGTACTCAAAGCCCTTGTGCAATGTGCAGTGAAGGCTGGACGATGTGCAAAGTGCCTATCCATTACTGCCTGCTGCACATTGCCTCAACAACACATAGCAACAATGTAAACATGCACGGAGGTGTCTGGTCAGAAAATGATCAGAAAACCTTATTAAAAAAGATATGGCATTTAAAttggaatatataaaaaaaagaaccaaaaaacaagagaatacattttcttacagtTGGATCTTATTTTATCCAAATGACTTCTGGAAATGCTGGAATGTTCACAATCTAATCAAGGTTTCAGACAActcatgtgtgtatgtatatgtctatatacatacatataaatacacacacacacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9534 lncRNA downstream 334693 45817998 ~ 45852813 (-) True G7744
TU9499 lncRNA downstream 1044054 45139142 ~ 45143452 (-) True G7714
TU9488 lncRNA downstream 1308287 44797506 ~ 44879219 (-) True G7704
TU9453 lncRNA downstream 1475455 44623190 ~ 44712051 (-) False AMCG00004372
TU9681 lncRNA upstream 114417 46304106 ~ 46304371 (-) True G7866
TU9682 lncRNA upstream 114825 46304514 ~ 46304760 (-) True G7867
TU9684 lncRNA upstream 119674 46309363 ~ 46309582 (-) True G7869
TU9685 lncRNA upstream 122748 46312437 ~ 46312684 (-) True G7870
TU9686 lncRNA upstream 123268 46312957 ~ 46313252 (-) True G7871
AMCG00004386 mRNA downstream 102038 46062808 ~ 46085468 (-) True AMCG00004386
AMCG00004385 mRNA downstream 140982 46011535 ~ 46046524 (-) True AMCG00004385
AMCG00004383 mRNA downstream 287057 45899269 ~ 45900449 (-) True AMCG00004383
AMCG00004382 mRNA downstream 297410 45874447 ~ 45890096 (-) True AMCG00004382
AMCG00004381 mRNA downstream 320040 45861295 ~ 45867466 (-) True AMCG00004381
AMCG00004394 mRNA upstream 65134 46254823 ~ 46269418 (-) True AMCG00004394
AMCG00004393 mRNA upstream 85887 46275576 ~ 46284863 (-) True AMCG00004393
AMCG00004391 mRNA upstream 99480 46289169 ~ 46300366 (-) True AMCG00004391
AMCG00004392 mRNA upstream 129609 46319298 ~ 46336014 (-) True AMCG00004392
AMCG00004398 mRNA upstream 693603 46883292 ~ 46887754 (-) True AMCG00004398
TU9361 other downstream 1665293 44520914 ~ 44522213 (-) True G7608
TU8946 other downstream 3808100 42376726 ~ 42379406 (-) True AMCG00004313
TU8320 other downstream 6338383 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 8818684 37367985 ~ 37368822 (-) True G6441
TU7345 other downstream 10773060 35354621 ~ 35414446 (-) False AMCG00004143
TU9683 other upstream 117237 46306926 ~ 46307319 (-) True G7868
TU9698 other upstream 278436 46468125 ~ 46468434 (-) True G7882
TU9761 other upstream 694946 46884635 ~ 46887337 (-) False AMCG00004398
TU9801 other upstream 870207 47059896 ~ 47306589 (-) False AMCG00004403
TU10259 other upstream 3759172 49948861 ~ 49949592 (-) True G8310

Expression Profile