RNA id: TU9698


Basic Information

Item Value
RNA id TU9698
length 310
RNA type TUCP
GC content 0.36
exon number 1
gene id G7882
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 46468125 ~ 46468434 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctgtattaaagacacctgtccacagaagcaatcaatcaatcagattccaaactctccaccatggccaagaccaaagagctgtccaaggatgtcagggacaagattgtagacctaaacaaggctggaatgggctacaagaccatcgccaagcagcttggtgagaaggtgaccacagttggtgtgattattcgcaaatggaagaaacacaaagtaactgtcagtctctctcggtctggggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacggtgaggaatcagccaaGAACTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9692 lncRNA downstream 149859 46318025 ~ 46318266 (-) True G7877
TU9691 lncRNA downstream 151280 46316602 ~ 46316845 (-) True G7876
TU9690 lncRNA downstream 151581 46316168 ~ 46316544 (-) True G7875
TU9689 lncRNA downstream 152456 46315357 ~ 46315669 (-) True G7874
TU9688 lncRNA downstream 152939 46314679 ~ 46315186 (-) True G7873
TU9729 lncRNA upstream 248889 46717323 ~ 46718779 (-) True G7910
TU9731 lncRNA upstream 250437 46718871 ~ 46723090 (-) True G7912
TU9766 lncRNA upstream 421213 46889647 ~ 46890133 (-) True G7935
TU9767 lncRNA upstream 422508 46890942 ~ 46893030 (-) True G7936
TU9802 lncRNA upstream 828440 47296874 ~ 47306589 (-) False AMCG00004403
AMCG00004392 mRNA downstream 132111 46319298 ~ 46336014 (-) True AMCG00004392
AMCG00004391 mRNA downstream 167759 46289169 ~ 46300366 (-) True AMCG00004391
AMCG00004393 mRNA downstream 183262 46275576 ~ 46284863 (-) True AMCG00004393
AMCG00004394 mRNA downstream 198707 46254823 ~ 46269418 (-) True AMCG00004394
AMCG00004386 mRNA downstream 382657 46062808 ~ 46085468 (-) True AMCG00004386
AMCG00004398 mRNA upstream 414858 46883292 ~ 46887754 (-) True AMCG00004398
AMCG00004402 mRNA upstream 529574 46998008 ~ 47002451 (-) True AMCG00004402
AMCG00004403 mRNA upstream 579690 47048124 ~ 47073819 (-) True AMCG00004403
AMCG00004410 mRNA upstream 1930383 48398817 ~ 48400277 (-) True AMCG00004410
AMCG00004411 mRNA upstream 1931892 48400326 ~ 48401535 (-) True AMCG00004411
TU9683 other downstream 160806 46306926 ~ 46307319 (-) True G7868
TU9361 other downstream 1945912 44520914 ~ 44522213 (-) True G7608
TU8946 other downstream 4088719 42376726 ~ 42379406 (-) True AMCG00004313
TU8320 other downstream 6619002 39841935 ~ 39849123 (-) True G6792
TU7893 other downstream 9099303 37367985 ~ 37368822 (-) True G6441
TU9761 other upstream 416201 46884635 ~ 46887337 (-) False AMCG00004398
TU9801 other upstream 591462 47059896 ~ 47306589 (-) False AMCG00004403
TU10259 other upstream 3480427 49948861 ~ 49949592 (-) True G8310
TU10293 other upstream 3536698 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 4202632 50671066 ~ 50673375 (-) True G8501

Expression Profile