RNA id: TU9818


Basic Information

Item Value
RNA id TU9818
length 244
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G7978
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 47685631 ~ 47685874 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cctatcaaaagtggtccaaggaaggaaaagcggtgaaccggcgacagggtcatgggcggccaaggctcattgatgcacatggggagtgaaggctggcccgtgtggtccgatccaacagacgagctactgtagctcaaattgctgaaaaagttaatgctggttctgatagaaaggtgtcagaacacacagtgcatcgcagtttgttgcgtatggggctgcgtagccgcagaccagtcagggtgcc

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9815 lncRNA downstream 37049 47648171 ~ 47648582 (-) True G7975
TU9802 lncRNA downstream 379042 47296874 ~ 47306589 (-) False AMCG00004403
TU9767 lncRNA downstream 792601 46890942 ~ 46893030 (-) True G7936
TU9766 lncRNA downstream 795498 46889647 ~ 46890133 (-) True G7935
TU9731 lncRNA downstream 962541 46718871 ~ 46723090 (-) True G7912
TU9819 lncRNA upstream 51 47685925 ~ 47686567 (-) True G7979
TU9903 lncRNA upstream 777307 48463181 ~ 48470217 (-) True AMCG00004412
TU9987 lncRNA upstream 1260192 48946066 ~ 48948896 (-) True AMCG00004420
TU9989 lncRNA upstream 1260192 48946066 ~ 48946897 (-) False AMCG00004420
TU9993 lncRNA upstream 1269502 48955376 ~ 48956463 (-) True G8116
AMCG00004403 mRNA downstream 611812 47048124 ~ 47073819 (-) True AMCG00004403
AMCG00004402 mRNA downstream 683180 46998008 ~ 47002451 (-) True AMCG00004402
AMCG00004398 mRNA downstream 797877 46883292 ~ 46887754 (-) True AMCG00004398
AMCG00004392 mRNA downstream 1349617 46319298 ~ 46336014 (-) True AMCG00004392
AMCG00004391 mRNA downstream 1385265 46289169 ~ 46300366 (-) True AMCG00004391
AMCG00004410 mRNA upstream 712943 48398817 ~ 48400277 (-) True AMCG00004410
AMCG00004411 mRNA upstream 714452 48400326 ~ 48401535 (-) True AMCG00004411
AMCG00004409 mRNA upstream 718306 48404180 ~ 48425709 (-) True AMCG00004409
AMCG00004412 mRNA upstream 782685 48468559 ~ 48480715 (-) False AMCG00004412
AMCG00004413 mRNA upstream 897265 48583139 ~ 48584401 (-) True AMCG00004413
TU9801 other downstream 379042 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 798294 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 1217197 46468125 ~ 46468434 (-) True G7882
TU9683 other downstream 1378312 46306926 ~ 46307319 (-) True G7868
TU9361 other downstream 3163418 44520914 ~ 44522213 (-) True G7608
TU10259 other upstream 2262987 49948861 ~ 49949592 (-) True G8310
TU10293 other upstream 2319258 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 2985192 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 3037993 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 4267790 51953664 ~ 51954532 (-) True AMCG00004505

Expression Profile