RNA id: TU9819


Basic Information

Item Value
RNA id TU9819
length 643
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G7979
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 47685925 ~ 47686567 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGTGACATTagtttattattgaaaaatataaatatctatgAAAAGGTATCGTAAAAGAAATTAGAAACAccgtatacattattttactttatagcAGGGAGAAATCGCTATGTGTTATGTTGTTCCCCCAAGAACGTATTATTTGAGTTGCATGTTGTAAAGCCGGACAGGTTAGAGTGACGCACGTCTTTGTGTGGTGGATTGAGAGGAGTAGTGGCGCTGCACTGCTGTGCTCGGCATTGTACTTGTAACTGCAACTCGGCTtataagagaaataaacaaaagcgCCAGGAACAATAAATTGTGTCAAGGAGTCCTGATGAAAGCTGAACCCCAAACAACATGTCTACCTCCGAAGAGACTCGTTTCACGGTTTACAGTATTAATTCGCCTAATGATCGCTCTGAATCTGCAGACACCATAATCCAACTGCATCGccctttgctgtttgtttttaatggtggGCGTGTACGCAGTTGGCTGGGCAGCGCTGATTGGGCAGAACGGAGGTGCGCTCACTCAATTGGTTAGTAAGACTGCCACACAAAGAGGGCAGTCATGCTTTTGCTCTGGGACACTCgctgcatatttttcatatcGCATCCACATCGCAGTCTTTGCGATTAGCTAATCGCAACATTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9818 lncRNA downstream 51 47685631 ~ 47685874 (-) True G7978
TU9815 lncRNA downstream 37343 47648171 ~ 47648582 (-) True G7975
TU9802 lncRNA downstream 379336 47296874 ~ 47306589 (-) False AMCG00004403
TU9767 lncRNA downstream 792895 46890942 ~ 46893030 (-) True G7936
TU9766 lncRNA downstream 795792 46889647 ~ 46890133 (-) True G7935
TU9903 lncRNA upstream 776614 48463181 ~ 48470217 (-) True AMCG00004412
TU9987 lncRNA upstream 1259499 48946066 ~ 48948896 (-) True AMCG00004420
TU9989 lncRNA upstream 1259499 48946066 ~ 48946897 (-) False AMCG00004420
TU9993 lncRNA upstream 1268809 48955376 ~ 48956463 (-) True G8116
TU10000 lncRNA upstream 1270227 48956794 ~ 48958363 (-) False AMCG00004420
AMCG00004403 mRNA downstream 612106 47048124 ~ 47073819 (-) True AMCG00004403
AMCG00004402 mRNA downstream 683474 46998008 ~ 47002451 (-) True AMCG00004402
AMCG00004398 mRNA downstream 798171 46883292 ~ 46887754 (-) True AMCG00004398
AMCG00004392 mRNA downstream 1349911 46319298 ~ 46336014 (-) True AMCG00004392
AMCG00004391 mRNA downstream 1385559 46289169 ~ 46300366 (-) True AMCG00004391
AMCG00004410 mRNA upstream 712250 48398817 ~ 48400277 (-) True AMCG00004410
AMCG00004411 mRNA upstream 713759 48400326 ~ 48401535 (-) True AMCG00004411
AMCG00004409 mRNA upstream 717613 48404180 ~ 48425709 (-) True AMCG00004409
AMCG00004412 mRNA upstream 781992 48468559 ~ 48480715 (-) False AMCG00004412
AMCG00004413 mRNA upstream 896572 48583139 ~ 48584401 (-) True AMCG00004413
TU9801 other downstream 379336 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 798588 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 1217491 46468125 ~ 46468434 (-) True G7882
TU9683 other downstream 1378606 46306926 ~ 46307319 (-) True G7868
TU9361 other downstream 3163712 44520914 ~ 44522213 (-) True G7608
TU10259 other upstream 2262294 49948861 ~ 49949592 (-) True G8310
TU10293 other upstream 2318565 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 2984499 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 3037300 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 4267097 51953664 ~ 51954532 (-) True AMCG00004505

Expression Profile