RNA id: TU9898


Basic Information

Item Value
RNA id TU9898
length 5604
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G8044
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 48463181 ~ 48468811 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCAatagaaaaacagacagacaaacgtaagtccattttgtttatttttttttctaactgcAGATTTAAGGTATACAACTGAACATTGTTATTTCCTTATGagacttataaataaaaatacaaaaaatgttcaCTACAAAACAATCTACCGTTAGTAGGATGTAAAAAATATTCTCTTTCGCTATTGAAGGCACAAACTTCACTTAGTGACAACATGGAGAAAAAAACCTGCAGCATTAaatctcttttatttatttatttttttccacactcCATCAGAGAACACTGAAAAGTTACAAAGAGATGTGTCTGAGCctacactgaaagaaaaaatcaaataaaaaagaaaccaatgCTGGTATCTGCAGCTACTACGTCTTAAAGCAGCGCTtcaaaaaacagcattattttttctgtactgGAAAAGACAAAGGACCTTGCAAAGCACTAATGCAAATAAAGTTTATACAAATgacgaaaaaaagaaaaaataataattggcaCCTTCTAAGATTAGGCTAAGAAGAGGTGCTGAGGTAGACGTAACTATAACatcaattcaaataataataaaaaaaacactatttttctttttaatacagagCAAACTGACTGGCACTTGTGctgtcacaaaaataaaaaataaaaatatcacagacaagccaaaaagaaagaaaaaggaaaaaaaaaaaaaagcttttttttttattttatttttttacacttgGTCCGACAGGGCAATTGGTCCTCAGTGCTAGAATATAAAAAAGACAATGTCTTGGTGCTTCGTTACTGGAACATTTTAGTCTAAAGATAAATGGCACATGCATGACAACACTGCATGAAATGGCTACTCAGTCTAGAACACcacactgaaacacagtgaTTGAACAGCAGGGATGTCATGATACTTTCAACAgcatttcccccaaaaaatattttgatgtatAATGTATAGTCTACTTCTTTTTATGCACTAAATCTGACAGTAAAAGTATCCAGAAGATGGAAAAGACTGTAAAATCTGAGTTGTGAGCAAATCTATGTTCTATTTTCCATTTGCCTCTTAGGCTAGATAACATTGCATTTGGAGCATTTCTTAAAAAGACTATATTTAACCATGACAGCACTCTCTTATACTGCATTTAGGTCCTGATTACATCAGCATCGCAGATTCAAAACTCAATACACAGACCCAATGGCAGAGAAAGCCATCAAGAAGTGACAGATTCGACATGTGCTGTTGGGTGGGGGtgtgaagttttgatttaatatgggCATTAGTTTTAATAAACTGCAACAGTTCTCTTTGTTAcaattcttttttaaattacccCCATATATCACTGATGTTTCATACTATGGTACATATGGTTCCTTTATATATTATGGTTAAATCAGATATTAATTAAGATTTAACTTTAAGATGAACTAATTAAGAAATAAGGTAGGATTCTGTGAAAATGCTACCAAATACTCCAAACTCCAAAACTTGGTATCATCTTTTGTTTTATAGtagtaaataaaacaacccccctccccccccaccgaTAAATGCTGTTTTCACCTATCATCGACATCCCTGGTAGATAAACACTATTGTTGTCtgaaagtacagaaaataagCAGATATAAATGGACATTTTTCgttgaacattttcattttaggcACAAAGATTACAGAAACAGTTAAAGCCAGTTTCAGACTTACATTGTGGGAAGAACTAAATCGATGCCAAATCCTTTTTCAGAAACATATTTTGAGACAGTGGCTTAGAATGCTGCTTGGTTTCGCATCTATTTAGTGCATTTATAAAtctcacacatgcgcacacttacacacacacacacacacacacacacacacacacacaacacaggcaAAGAAGTTCCTTAAGCATCATAAACTTTAAATGACTACTTTTAGAGTAACTTGTTAACAGAATCTCTCTCACCCCATGCTGTTTACAGTCTATACTGGTTCTTAGTGTGATGTGTTCCTAAAGCATAATGTTCGCAGTGGATATGCTACCGCCAGATCCTTGACAGGAGCTCATTAGAAGTCATCTTCCTTTGAATGTTGTCTCTTTACCAATTACCAATCCCTCAATTCACAGTGTTTGGAACAATTTGGTGGGATTAAACAGAGAAAGATacatatgctttaaaaatgtattacagctattgaaaatgtatttcgaTTTCATTAACCCCCCACCTTTCAATTACTTCAAGTATtcttaaaaaagagaaaagaaaggctTTAGAAGAAGTTTTTTCCTCTTCATGATTGGCAGCACCTGACTCCAATTTGTTCGGCACGTTGTAACAAGTGGCTTTGTGGCAATTAGATTTAGTTCTTCACCAACAAATTTAGTGACATCCAGAAAGCAACACGTATTACtacactttcacacacatttatgtCCAACATTACAAAAGAGGTGCagggcaaaaaagaaaagaaaaaaaaaaaacagaaaaaatgaaaaatttgCCCTGCTGAATActtgaaaaaaaattgaaagggACTTacacttaatacaaaaatatcacaattttATATATCAAACCGGCTCTGTTGGCTCTTGATCAGGAATATGTTCATCTCAAGAAACTTAAGTTTTGCCGAccaacagtattttttttttctttctttcctttttctctctctttgtttacCACTTGCAGTTCCCATTGTCCAACGCACTCTGCATCAATGCATATTTGACCTGCTCTTAGTGGTTCAGTTTCAGTGAACCatcttttttttcacattattacaAAACTACAATTCTATTCACATATTTCAAGTTTAACACTTTTTAACGTTCTTTAAAGTACTATACTTTTACTAAATCATCACTGCCTCCCATTTCGATTTTTACCCATCTTTAAGGCttcaaaatgtttcctttttatcCACCCCTAAGCTGAAAGGGTCGGAGGGGACAACCAGGGGAAAACACCttggtttttaatttccctTACTTCCTATCAACAACTACCTTTCTAACCCTTTATATAAATGTAGATAACACACAAACGGACATAAAATACCATTGAAGATAAAGCATGAGATGAAGTTGCAAAGACGTCATAACGCAAAACACAAGAActacaaaatgtgcttttttgcaactgaaaataaaaagaacaacttAGAGGTAGCTTTTATGACAATGACCgaaacaaaaaaagttagaCACAGCTTTTTAATAAGCCgagctaataaaaaaaataccaatttTGGTAACAATAATgcacaaaatataatgaaaagaaaaacataattgctATTTTCACCGCGGCACTTAAGTACTCCATTATTCCCGAGTTTGCTTCGCTTTTCCACGTCACCCTATTGTGACACAGCTttcagacacaaaaaaaaagtcatttaaaaaataataataaaattaaaaatcaaaatacaagCTCATGAGGTCACAAAAAACGAGGTAATTCAAGTACAAATGTGCTGAAATACaccaaggttaaaaaaaaaaaaaaaaaaaaaaaatgaaagaaaaataaaaaatatataaagagtttcattttccttcttttatCTCAAGCCACCAGGGCTGGGCAACTAAATAGTCCAGGCAACCGCCTCACATTGTAGCTGCGAAACACGTACTAACTGTTCATTTTGATATGTTGTTAAAAGTACTGCATTTCAAGAACCGTTATATTTGATCGCGAACATGATATGGTCACATTAGTCATTTTGGTCTCTATTATATTGGCATAAGAAGTGAATTAGTGTGAAGCACTGTGGGTTTAAAAAAGGCCGTACTGGGTTGTAGCTGAAGCCCCCTGCTTCTGAAGTTACCACTGGTTGAGTTATCCCAGTTAGAAGTGTAAGCCACACAGGTCAGGTATGTGTAATTGTGTGCGCTGaggaataacaaattaatacaagGAAGAAAGTTctgtataaacatacatgttttttttgttttgtttttacaggtaATTTGAAACAGCACCCCCCTACTGAGCAATCCCATTCTGTGTCTGGAGCCAAGAATGCAGAAAGCTGACATACTTTCTTAATGCAATATATCTGTACTATGCTACTGACTGCAGCTCGCAAAGATATGATTATTCATGTGACAGTCGCAAATAAGTACATGGATGGATACTCGCAGAATTTACCAGCCGCTGGTTAAACTGCTTTCCAGAAAAGCCCTTGAGGAACAGTAATGCAACACGAATGGTAAAGTATGGAACACTTTTTGAATTCACAAATGAATTCCGTTGTGTAGTTTTGAAAACATACCACGACTGGAAAAATCCTGGACTTTTGTCTCAGGAAATTCACAGCAGGTAAGAGATTGAAGAGAAAACCTAATTCTGTGTGCTGTTACACAGGCGTTTGCCAAGCAATGCATCTGTGCCAAAGTGGATACAAAATGTAAGATTTGTATCTGAAAAAAATACCAGCATTGGAACTTTAAGTGCTCTATGCATCTATTCAAAACCAGCTGAGCAAAGCGAGGCTCATTCGAAGCAGCACCAGAGTTAACCTTAGCCGGGAGAGATACCAAAGAAAATCGAATTCTGCCAGATTACAGGGAGAGACGATTTACTTTAAGGAAAACTATTCTCCAAGTCCTACTTTCCTCTGTCTGGTAATGCAGGAACGGAAGGCACACCGCTTTTTCCACTGAAAAAGGtgagaaacagaaataataagaaatccCCCCAAGAAACCCTCTAATATTGAACTGCTGCAGTCAGTAATAATGCAATCTGCAGCCCCTTAGCAGCAGAGCAAGGGAGCAATCTGGGACATCGCTTCGGCATAGCCACAAGAGAAAGCTCTGAGCAGTACTCCCACTTTTGCAAGCCCGACAGACACGACAGTCTGAAGCTGACCAATCATGACTGGACTCCGGGGAATAGTAAGCAACGCAGCTTGTGGCCCAAAGAGATGGATCTGTCCATGTTTCTTGTGACCTCACTGGAAGTTACAGAGATGCCACAGAGGTACTTTCTTAAGCATGCATGACAGCGTTGTTATTGTCTgaatattatctttttttattttttgatggtggtctttaaaacaaacaaacaaaacaaaacaaaaaaacaagaacaaaccaatacagaaaaaacactATCAGAACAGGCCTCCCTAACCTCCCCTCCCTCCAGGCTCCCCTCCTGCATCCCTTGTATTATTCTGTTCCCCATcgtctttattgtattttatttgaactgtgtattaatggatttatttgtcttatttcttaacatttttaatggtaattaattaaatttttgtgttttgcctgtttttgttgttgttggtgttggtgttggtgttggttttTTGCTCAGACGTAGCAGAGATACAGATAGGTTTTCTCTATCCTCCAGTCCGGGGGAATATCCTCTGGCTTGTGGCCCTTCATGTGTTTCTGCATGGCGGACAGGCTCGGGCAGTACTCCAGGCAGATGGTGCATTGGTAGGGAGACGCTCCATTGTGGGTCCGGAGGTGCTTGATCATAGCGGAATAATCTCTGGAGCGCTGGTGGCACAGTTTGCACTCAAACGGCTTCTCACCTGCCgagaaaaaagcaacacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU9817 lncRNA upstream 777300 47685520 ~ 47685881 (+) True G7977
TU9814 lncRNA upstream 814607 47648188 ~ 47648574 (+) True G7974
TU9785 lncRNA upstream 1465376 46992217 ~ 46997805 (+) True G7949
TU9730 lncRNA upstream 1740093 46721829 ~ 46723088 (+) True G7911
TU9725 lncRNA upstream 1745926 46715778 ~ 46717255 (+) True G7906
TU9944 lncRNA downstream 378715 48847526 ~ 48848126 (+) True G8083
TU9954 lncRNA downstream 428306 48897117 ~ 49026355 (+) False AMCG00004421
TU9955 lncRNA downstream 428306 48897117 ~ 48978632 (+) False AMCG00004421
TU9968 lncRNA downstream 487156 48955967 ~ 48959831 (+) False G8103
TU9967 lncRNA downstream 488789 48957600 ~ 48959831 (+) True G8103
AMCG00004404 mRNA upstream 10484 48445728 ~ 48452697 (+) True AMCG00004404
AMCG00004407 mRNA upstream 19914 48428416 ~ 48443267 (+) True AMCG00004407
AMCG00004408 mRNA upstream 70365 48373270 ~ 48392816 (+) True AMCG00004408
AMCG00004406 mRNA upstream 108006 48350861 ~ 48355175 (+) True AMCG00004406
AMCG00004405 mRNA upstream 132286 48324125 ~ 48330895 (+) True AMCG00004405
AMCG00004414 mRNA downstream 144338 48613149 ~ 48624152 (+) True AMCG00004414
AMCG00004416 mRNA downstream 160361 48629172 ~ 48643430 (+) True AMCG00004416
AMCG00004415 mRNA downstream 361727 48830538 ~ 48846603 (+) True AMCG00004415
AMCG00004421 mRNA downstream 508831 48977642 ~ 48978607 (+) False AMCG00004421
AMCG00004422 mRNA downstream 540880 49009691 ~ 49040036 (+) True AMCG00004422
TU9841 other upstream 316025 48146888 ~ 48147156 (+) True G7999
TU9559 other upstream 2494875 45962010 ~ 45968306 (+) True AMCG00004380
TU9000 other upstream 5772072 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 6246819 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 6955950 41459576 ~ 41507231 (+) True G7094
TU9962 other downstream 463639 48932450 ~ 48934095 (+) True G8099
TU10340 other downstream 1682453 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 2274980 50743791 ~ 50753349 (+) False AMCG00004477
TU10626 other downstream 2646130 51114941 ~ 51115262 (+) True G8606
TU10780 other downstream 3470750 51939561 ~ 51946818 (+) True AMCG00004501

Expression Profile