RNA id: TU9962



Basic Information


Item Value
RNA id TU9962
length 680
RNA type TUCP
GC content 0.33
exon number 2
gene id G8099
representative True

Chromosome Information


Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 48932450 ~ 48934095 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


gaggggggtgaaatattacacatttttcattttttcagcaatgagaaaaaaaaatgcctcaCAATctgaaactttatttttgtctctgtCTGGCATGGGGAGGATATCGTTTTTTTGGATGCTGAAGCCCAGATCCTTTAGTGCATTTTCAACAAAGGTCTGGCTCAAAGGTAGGCAGGACAGCCTGTGTTCCCCTACAACATAAAAGGTTTCATTTAAAACCCCAATCATTATCAACACCCCACCAGGTCTCAGAAGCGCCGTGACATTTTTCAGAGCTTGCTGGTAGGTAGGATGGTCCTTACAGGCCGCTTCGAGGCACAGGGAGGTCAGCACACAGTCCGCAGGCTCCAGGACGAGGGGGTGGAAGGGATTCTCGTGCCTGACGTCACACGGCAGCACCTGCTTCACTGTTCGTCTCAGCCTCTCTTCCATTTCCTTGGGTGTTCTGCTTGGCCACCACATTTGAATCTTTTCCCTTCCAGTTCACTGACGAACTGTATAACTGGGCTCCAGTCAAAACACCCCTCATCTCCTCTCAGCCATTTCTGGACTTCCAGGCGATTGGTCTCAGTGAAGTCGGACAGGACAATGTCTTGGAAATGGTCGCAGGCGCTCACAACGCTGTGGACTGTGGGGCCACTTCCTACTTCAATGAGTGTCTGTCCCTTGTACCTACC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU9944 lncRNA upstream 84324 48847526 ~ 48848126 (+) True G8083
TU9898 lncRNA upstream 463639 48463181 ~ 48468811 (+) True G8044
TU9817 lncRNA upstream 1246569 47685520 ~ 47685881 (+) True G7977
TU9814 lncRNA upstream 1283876 47648188 ~ 47648574 (+) True G7974
TU9785 lncRNA upstream 1934645 46992217 ~ 46997805 (+) True G7949
TU9968 lncRNA downstream 21872 48955967 ~ 48959831 (+) False G8103
TU9967 lncRNA downstream 23505 48957600 ~ 48959831 (+) True G8103
TU9953 lncRNA downstream 43495 48977590 ~ 48978632 (+) True AMCG00004421
TU9980 lncRNA downstream 90061 49024156 ~ 49029183 (+) True G8111
TU9977 lncRNA downstream 121265 49055360 ~ 49060055 (+) True AMCG00004424
AMCG00004415 mRNA upstream 85847 48830538 ~ 48846603 (+) True AMCG00004415
AMCG00004416 mRNA upstream 289020 48629172 ~ 48643430 (+) True AMCG00004416
AMCG00004414 mRNA upstream 308298 48613149 ~ 48624152 (+) True AMCG00004414
AMCG00004404 mRNA upstream 479753 48445728 ~ 48452697 (+) True AMCG00004404
AMCG00004407 mRNA upstream 489183 48428416 ~ 48443267 (+) True AMCG00004407
AMCG00004421 mRNA downstream 43547 48977642 ~ 48978607 (+) False AMCG00004421
AMCG00004422 mRNA downstream 75596 49009691 ~ 49040036 (+) True AMCG00004422
AMCG00004424 mRNA downstream 109495 49043590 ~ 49057634 (+) False AMCG00004424
AMCG00004426 mRNA downstream 345065 49279160 ~ 49293068 (+) True AMCG00004426
AMCG00004425 mRNA downstream 364641 49298736 ~ 49318835 (+) True AMCG00004425
TU9841 other upstream 785294 48146888 ~ 48147156 (+) True G7999
TU9559 other upstream 2964144 45962010 ~ 45968306 (+) True AMCG00004380
TU9000 other upstream 6241341 42688779 ~ 42691109 (+) True G7329
TU8899 other upstream 6716088 42212510 ~ 42216362 (+) False AMCG00004304
TU8679 other upstream 7425219 41459576 ~ 41507231 (+) True G7094
TU10340 other downstream 1217169 50151264 ~ 50157719 (+) True G8377
TU10527 other downstream 1809696 50743791 ~ 50753349 (+) False AMCG00004477
TU10626 other downstream 2180846 51114941 ~ 51115262 (+) True G8606
TU10780 other downstream 3005466 51939561 ~ 51946818 (+) True AMCG00004501
TU10796 other downstream 3055258 51989353 ~ 52013630 (+) True AMCG00004509

Expression Profile