RNA id: TU9998


Basic Information

Item Value
RNA id TU9998
length 673
lncRNA type sense_over
GC content 0.36
exon number 3
gene id G8118
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 48977624 ~ 49048073 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttgtaataaaaaaaaaacatccttttaTTGATTAACGTGTACAGAACCATAGTGGGACGGATGAGGACAGTCCATGAGTGGCAATTGGAAGAATGTCCATCGAGATATTCTAGGAAAGCTGGAAAAAGCCCGATCAGCTTTGGTGCTGCAGTTTGGTATACAATGTCTACACAGTCTTGTCTGAGATGGAGATACAGCTGTTTCGGTTAATTGTAGAAAGTCATGCCCAAGGAGAAAAACGCGTTgacagtaaataaaatgtaagacaGGAGATGATAAAGCGATGGACACAATTCAAGCAGTCTTCAGTTGGCTAATGCTTGTTTCCGCCGGCAGCGTAGACGGCAAttacaatgattaaaaaaatcactCCAATTACAACTCCAACTATGTTCAGGATCTTGGCAACCCTGGACGCCTCTTGCGCTTCAGTAGCGTTCCCGGAGTTGTTGGCATTCTACTTTGCAGGAATAGATAACTGCAGCGATGCCAATAGGAAGACAGCAGCACAGCATGTTAATGATGGACCATGCCAGGTAGGATGGCACAGTTGATCTCGTCTGACTGCCCTGCATGGTTCTGGCACTGGTATCCACACTTCTCCCGGCTTATGGCACTTTGCGCAGTCTGCTGCTCAAATGTGGAGGGGGGTTTCAAATGCACTCTTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU10000 lncRNA downstream 19261 48956794 ~ 48958363 (-) False AMCG00004420
TU9993 lncRNA downstream 21161 48955376 ~ 48956463 (-) True G8116
TU9987 lncRNA downstream 28728 48946066 ~ 48948896 (-) True AMCG00004420
TU9989 lncRNA downstream 30727 48946066 ~ 48946897 (-) False AMCG00004420
TU9903 lncRNA downstream 507407 48463181 ~ 48470217 (-) True AMCG00004412
TU10015 lncRNA upstream 53635 49101708 ~ 49101912 (-) True G8133
TU10066 lncRNA upstream 374571 49422644 ~ 49425182 (-) True AMCG00004429
TU10228 lncRNA upstream 763305 49811378 ~ 49814054 (-) True G8281
TU10233 lncRNA upstream 796509 49844582 ~ 49858455 (-) True G8286
TU10256 lncRNA upstream 896225 49944298 ~ 49945808 (-) True G8307
AMCG00004419 mRNA downstream 43208 48932465 ~ 48934416 (-) True AMCG00004419
AMCG00004417 mRNA downstream 47060 48910997 ~ 48930564 (-) True AMCG00004417
AMCG00004418 mRNA downstream 82623 48889077 ~ 48895001 (-) True AMCG00004418
AMCG00004413 mRNA downstream 393223 48583139 ~ 48584401 (-) True AMCG00004413
AMCG00004412 mRNA downstream 496909 48468559 ~ 48480715 (-) False AMCG00004412
AMCG00004423 mRNA upstream 202163 49250236 ~ 49259701 (-) True AMCG00004423
AMCG00004429 mRNA upstream 363134 49411207 ~ 49424986 (-) False AMCG00004429
AMCG00004432 mRNA upstream 389884 49437957 ~ 49439719 (-) True AMCG00004432
AMCG00004433 mRNA upstream 402755 49450828 ~ 49461400 (-) True AMCG00004433
AMCG00004435 mRNA upstream 534050 49582123 ~ 49588829 (-) True AMCG00004435
TU9801 other downstream 1671035 47059896 ~ 47306589 (-) False AMCG00004403
TU9761 other downstream 2090287 46884635 ~ 46887337 (-) False AMCG00004398
TU9698 other downstream 2509190 46468125 ~ 46468434 (-) True G7882
TU9683 other downstream 2670305 46306926 ~ 46307319 (-) True G7868
TU9361 other downstream 4455411 44520914 ~ 44522213 (-) True G7608
TU10259 other upstream 900788 49948861 ~ 49949592 (-) True G8310
TU10293 other upstream 957059 50005132 ~ 50008694 (-) True G8340
TU10487 other upstream 1622993 50671066 ~ 50673375 (-) True G8501
TU10541 other upstream 1675794 50723867 ~ 50725353 (-) True G8542
TU10795 other upstream 2905591 51953664 ~ 51954532 (-) True AMCG00004505

Expression Profile