RNA id: AMCG00004751


Basic Information

Item Value
RNA id AMCG00004751
length 4949
RNA type mRNA
GC content 0.52
exon number 13
gene id AMCG00004751
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 266974 ~ 305834 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTCTGACATTATTATATACATCAATCAAACTGGATTTAACCTGGGGGCACCAGAGCCCGGTTTGAACCACACAAAGGGTGTTTCTTCAGCCATTATTTTACCCAGTGGAACATTTCTCTTGCCTTATTTTTGCTTCTAGTTTTGGAGTAGTCACGAATGTGATATTTTACAGAGGGGGAAACAATGCAGAAGTTATTGCAACATAATACACTTATATTCTAGAAAATACATGCTACTGGAAGTAAATTCATACTGGCCAATACATTTCACAGCTGAAGTTTCCGTGAAACCTTGTTAAATGTGCAGCTAAAGAAAACGAATTCACCTCCTATAGATACatgtttgtgtacatatttgttCGGGTTAGAAACGTAAAAAAGTGTCTTGTATAGTTATCTGATGGAAGGCGGAAAATAATCTCGTAAAATATACGAGTGCATTGAAATGATTGCTATTCAGAATAGCTGGTCAATCAAATGTGCTTGGGTTCGACTGTGAACGGTTTTCAGGTTTGCGGCGCAGAAGTCcgcgggtctgcgctgctccgccaatgggatcgggggattctgcagatctgcgcagaacagTGCAGCGATGTTTGATCAGCTGCAACACACTTCACACCATCTGACGTTGCAATGGCACGCAGGATATTCACGAACAGTTATGGCAGCTGCGAGCGAGTGGCTAAAAGTGTTTTGATGAAATAATACATCGATACAAAGTTTGCTTTCCAAAACAGCAGACGCGAGCAGCCTGTGCAGCGCGCAGACCGACAGTGAGTGTTCgcggtgagagagagagggactccGGCTCCTCCTCTCCGCTCATCTGAGGGGGAAGAGAAACAAAGTTTGCATCCCTCGGTCGAGGCTCCGGCCGCAGCCTGTTGTTCGCAGGGAAACAGACACGGAAGATGGCGCAGCACCGCGGCTCTGCCACGTCTCGAAGCCCCGCGCCGCCCCGGACCCCTCGCCCCTCCGCgccgccgctgctgctgccgctgctgctgctgctgtccccGCTGCCCGCCGAGGCCGGCCTGTACTCCGCCAGCGACCAGGTGCTGCTGCCGGACCCCGACGGCATCGACGCGCTGCTGGGGAACTCGTCCCGGGCGCTGCTGCTGGAGTTCTACGCGTCGTGGTGCGGACACTGCGTGGGCTTTGCGCCCGTCTGGAAGCGCCTGGCCCGGGACATCACAGAGTGGAAGCCCGCTGTGGATCTCGCAGCCTTGGACTGTGCAGAGGAGATCAACAGGCCCACCTGCATCCGTTTCGGAGTTAACCGATACCCCACTATAAAGTTTTTCCATGCTTACTCAAAGCCCGGATCCAAGGGAGAGCTAGTTGAAGGTGTCTCTAGTGATGTGAAGGGGCTGCGGCAGCAAGTCATTGACCTCCTGGAGTCACACGGACACACCTGGCCCCCCGCCTGCCCGCCCCTCGAGCCAGCCAGTGAGGCCGAGATCGACAACTATTGGGAAACAACCAATGGGGGCTACCTGGCGCTCATCTTTGAGACGGCAGATTCATATGTGGGTCGAGAGGTCACGCTGGATCTGTTGCAGTACGAGAACATCGCGGTGAGGAGGGTGCTGAACACCGAGCAGGGCCTGGTCTCCAAGATGGCCGTCACAGACTTCCCTTCCTGCTACCTCTACTACGCCAACGGGACCTTCGCCAGGCTCAATGTGCACGTGGAGGCGCGCACGTTCTACTCCTACGTCCTCCAGCGACTGCCTACGGTGCGGCGGGCGGGAAAGCCACAGCAGGGCACTGTAACCCTGGTCGCCAATGCCACTAACCAGGAGTGGAGGGAGTTCAACAGGAGGCGGGTGTACATGGCAGACCTGGAGTCGGCGCTGCACTACTCCCTGCGCATGGAGGTGGCCGGACACCCCCAGATCAGCACAGATTCCCTGCAGGCCCTCAAGCGATACATCTCTGTCCTGGCCAAGTATTTCCCTGGGCGGCCCATTGTCATGAACCTGCTGCGATACCTGGATTCCTGGCTGCAGGGCATCACGGAGCcggagatctcctacagctctCTGCTGGATGTGCTGGACAACAAAATGGAGGTTCCCCGTGCTGCTCTGCCCAGTGAGGTGAAGTGGGTGGGCTGTCAGGGGTCCCAGCCACAGTTCAGGGGCTACCCCTGCTCTGTGTGGACCCTCTTCCACGTGCTCACAGTGCAGGCTACAGCCAACAGGACCGCTAAATCAGATCCCCTTGAGGTCCCCCAGGCACTGATTGGCTACGTGAAGAACTTCTTTGGCTGCAGAGAGTGCGCCAGCCACTTCGAGAACATGGCGCAGGAGAGCATGCAGCAAGTCAAGTCCCTCGCTTCGTCTGTGCTCTGGCTGTGGTCGCGGCACAACCGGGTCAACAACCGACTGGCAGGTGCCCTGAGTGAAGACCCCCAGTTTCCCAAGATCCAGTGGCCGCCGCCAGAGCAATGCCCAGGCTGCCACGATGTGAAGAGGGGTGAGCACACGTGGAAGCAGGAGCCGGTGCTGTACTTCCTCAAGGAGTATTTCTCGGCCCAGAGGATCCTCCCAGACTACCTGGAGGAAGAGGCCGTGCTGCTGGACAAGCAGGCAGCCCAGCGTGCAGCGGCGGAGGCTGGTGGGGGCGGCCGCAGGAAAGGCAGGGGCGCCCctgaggagggagaggaggaagaggaaggggagcagCAGCTGGCAGGGGAAGAGGAGGATGGGGAAGACGTGGATGaacagggggagggggaggcgACTGCGGAGGCTGCACCGGAGATGGAGGCCGGTGACGCGGGCCGGCACTGGGAGGACGTGGGCCCAGCCAGGATTCGGCGGCCCAGCATCGTGGGGCTCAGGCTGAGGGAGGAGCGGGGGAGCGAGGACATCGTGGACCTGGACTCCTTCGTCAACCAGCATTACAAGATCAAAGCCCTCCGTGCCGCCGCCGATGCCGCCCAccggagggaggaagaggaggaggaggctgagCAGGGGCCGTCGCTCCAGGGGCAGCCAGAGGAGCCGGCTGACTACGTGGCGGTGCGCAAGCGGCTGCAGAAGCGCGGCCTAGCGGGGAAGTACATGGGGCTGGAGGAGGCTGACACCGAGCCCCAGGGCAAGCGCTGGATCTTCCTGCTGAACGTGGGCTTCTCCCGGCTGGACATCAGCCTCTGCGTGCTGCTGTACCTGCTGTCCTCACTGTGCCTGATGGCAATGTACCTCTACTTCAAGATGAGGCTGCGGCTGCGGAGGGGCAAGCAGGCACTGCCCTGACCCCCCCGGCGGCCCTTCAGACAAAGCCTAAACCCTGATCCGCAGCCCCCCTGGAAACTGGtgtcagttgtttatttttttcgtaattcaaattattattattattattattattattattattattattattattattattattatttttcatcacTGTATTAAAACTACTTATTTGgataaaaataatctgtgaaTCACTACAAACCTCAGCTATATTGTCCATTTGAAATATACTGATAATTGAGTGGCAGAAGAGttaatttctttataaataGTTGTTTCCAGGTGATCGATCCCTCAGGAATTTGAAATGAGGAACACTGATAGAAATGGATCTGAAGTTCTGTAAATGGAAGTCCTGGGGGAATCTGATTATAGTTACTCCTGCTATAGGCTAACATTGAAGGCGTACCCTGTGTACACAATGTGAACCTGACCACCTTTTCAGTGGTGTGTGACCAGAGCTCagagcacactgcacacatccTTCAGCCCTGCTTCTGGTTCACACCACTCTCTCAAGATCCTTTGGCAGTGCTTAGAAACCTTTTTAGCACTCACTTTTTGGCAGATCTATACCTCTATTATATAAGAGGAAGTGGTCATAACTGATTGGAACAGTAAGATTGATTTGacttattatattttcaagGTTTCTAAATGTGAATAAAGTGCACATACAGCCTACTGGGGGAAAATGGGACCATATTTATTTAAGCACTGTTGGCCCGTGACAGCTGGGGCTTCATGTATGGAGCagtcccctcccccacccccacccaccacaGGAACCACAATCTTGAATATGATCTGACGTCGTAAACTGTGTCGTGGGGCAGGAGGAGGATTTTATTGGCATTTAAGAGATTTTCTTTTTGGGGGGTTGGGATATAAAGTGATGGGGGCAGGTAGGTGTGCATTTCTGATGTTGCCTTTGGTTACCTGGGCAAtgaaagagggggagggagggttTCAGCCTTTGGCCGGGTTTGTGGGGCTTCAGGGAAAGGGGATGGCCGTTCCAAATATCAGACCCTGGTCGTCTGTACTCCTACAAAACACGCCAATCACAGCTGAGAAGCAGTTCATCTAATAAGCAGTTACCCCCCAAAGCATTACCCTGTGACTTGATGAAACAAAGAAGTGGATCACAGAGCTGATGAACAGTTTGCATTGCTCTTGATTTTTGCTGTGAAATCTGACAGTTGTGTGGATTGGTGTTGCAATATTGCCTGTTGTAACGGTGCCCTGTGTAAGCTTGTGCTACATAATGTTCCTCTGTAtggtcatttaatttttttttctttttccctgtAATTGATTTTGAAGGCTAAGGAAATGCATTGTTTGCAAAGTTCAGAGCCAATTGAAAGAAGATCCCATTCTCTTGAAGTGAGTTATTCAATGATTCCATATTTGTTATGGATTTTCATGTGCttttaataattaagtaattaattaattaataatcagCCCAGTAAAGCATCCTTTCCTGAACTGCAATGTGAAactggtgtttttttgtgatgCTAGGTTAAGTTCAGGGTTTTCACAATGAAGCAAGGAAATGGACCTCGAAGTTCTGCATTTGCTGGACTAGATGGAGTGACTGATTGCTCCTACTAAAATTATTCAAAAGtgatcattaaaaatatattcactcTCAA

Function

GO: NA

KEGG:

id description
K10758 QSOX; thiol oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179579 lncRNA downstream 156482 109264 ~ 110492 (-) True G142766
TU179577 lncRNA downstream 157763 105040 ~ 109211 (-) True G142765
TU179656 lncRNA upstream 1282 307116 ~ 351627 (-) True G142828
TU179753 lncRNA upstream 398456 704290 ~ 705016 (-) True G142890
TU179754 lncRNA upstream 426650 732484 ~ 732959 (-) True G142891
TU179766 lncRNA upstream 474584 780418 ~ 782340 (-) True G142902
TU179784 lncRNA upstream 483268 789102 ~ 792949 (-) True G142920
AMCG00004750 mRNA downstream 45797 215361 ~ 221177 (-) True AMCG00004750
AMCG00004752 mRNA upstream 5030 310864 ~ 364423 (-) True AMCG00004752
AMCG00004756 mRNA upstream 71284 377118 ~ 402042 (-) True AMCG00004756
AMCG00004755 mRNA upstream 109528 415362 ~ 422526 (-) True AMCG00004755
AMCG00004754 mRNA upstream 119438 425272 ~ 434187 (-) True AMCG00004754
AMCG00004753 mRNA upstream 132140 437974 ~ 445479 (-) True AMCG00004753
TU179586 other downstream 136271 127778 ~ 130703 (-) True G142773
TU179583 other downstream 144447 119695 ~ 122527 (-) True G142770
TU179730 other upstream 338170 644004 ~ 646379 (-) True AMCG00004763
TU180047 other upstream 2403720 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 2833023 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 2833023 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 3807913 4113747 ~ 4116414 (-) False AMCG00004819

Expression Profile