RNA id: AMCG00004753


Basic Information

Item Value
RNA id AMCG00004753
length 1274
RNA type mRNA
GC content 0.51
exon number 7
gene id AMCG00004753
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 437974 ~ 445479 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTAGCGCATGTTTAGCGCATGTTTAGCGCATGCCTCGTCGCGTCTACCTCGCCGCTCTGCTCACGCACATGCGTAGGTGGTGCCGAGTCATTGCAGTTAAATAAAGCGCGGAGCAGACGGCGGctgtccgtgtgtctgtgtgtgtaaaccGGTATCGTTTAGGTTGTAGTCCGCGCATTATCCACACACATGGAAAACCACAATGCCAAAGTGCTATTTAACCACGCCGCAACTCTGAATCTCCACACCGGGAACCTGGTCAACAGAAGCCGGCTGAAGAAAAAATGCCCTTCTTCACCCAGTGAGGAGCTGCAGGACTGTATTCGAGCCACCCTGACTGAATGGTGTTCAAAACTTCCCCCTGCCTTGGACAAGGAACTTCCCAACACACTGGAGTGTACCTTTACTCAGGCCACAGATGCAATTACACCTGAAGAAAGGGAGGAACTGAAGGTTTCGGTGAAGCTTTTTCTCAGTGGATCAGACTGCACCTCTATCCGTAATGCTGTAGATATGGCATGTTCAGGCCTGGGGGTGTCCATGCTGGACTCTGTGATCATTGCCCCCCCCCTGCTGCCTGAGGGAGAGGGCCTAGCCCTGGGTCACCTGCAGCCTCTCTGGAAGGAGCTTGAAAGCCTGGTCCAGAGCCACAAGGTCACAGCCATCGGCACCTCCGATCTGGATAAAGCTCTACTGGAACAGCTGTACTTGTGGGCGCAGATAAAGCCCAGCAGTAATCAGGTGAACCTGGCCTCCTGCTGTGTGATGCCTCCAGACCTGACTGCATTTGCCAAGGAGTGTGATATCCAGCTGCTGACCCACAATGATCCCAAAGaacTGATGACTGCAAGCGGATTCCAGGAGGCTGTGCAGGACAGCATTGGGGAGCCGCTGGTCACAGAGTGGTTCCTGGAGTGGGTCCTACGCTACTCAGTCATTGTCAAAAGCAGAGGCATCATAAAATCAAAGGGCTACCTTGTTCAAGCCAGACGAAGCAATTCTCATGACCAGTGAATCCAGATGAATAACATCACCTTCCCCACAgatctttatttctttaattagcGAGGCTAATCTGGAGACCTTTGCGGAATAAAAAAGGACCACACCTAACTGACTCATATTATCCTAATTTACAGCCTTATGGCACGTTTCCACTTGTGTCTGTATGCTTTatggcagtggttttcaaataGGTCCTGGAgttccccctgccctgctgttttttgtgccAACTGAGGTCTTCATTAatgttcaattaaggattcaatt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016874 ligase activity molecular_function

KEGG:

id description
K11205 GCLM; glutamate--cysteine ligase regulatory subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179656 lncRNA downstream 86347 307116 ~ 351627 (-) True G142828
TU179579 lncRNA downstream 327482 109264 ~ 110492 (-) True G142766
TU179577 lncRNA downstream 328763 105040 ~ 109211 (-) True G142765
TU179753 lncRNA upstream 258811 704290 ~ 705016 (-) True G142890
TU179754 lncRNA upstream 287005 732484 ~ 732959 (-) True G142891
TU179766 lncRNA upstream 334939 780418 ~ 782340 (-) True G142902
TU179784 lncRNA upstream 343623 789102 ~ 792949 (-) True G142920
TU179825 lncRNA upstream 724534 1170013 ~ 1170516 (-) True G142953
AMCG00004754 mRNA downstream 3787 425272 ~ 434187 (-) True AMCG00004754
AMCG00004755 mRNA downstream 15448 415362 ~ 422526 (-) True AMCG00004755
AMCG00004756 mRNA downstream 35932 377118 ~ 402042 (-) True AMCG00004756
AMCG00004752 mRNA downstream 73551 310864 ~ 364423 (-) True AMCG00004752
AMCG00004751 mRNA downstream 132140 266974 ~ 305834 (-) True AMCG00004751
AMCG00004761 mRNA upstream 114646 560125 ~ 584445 (-) True AMCG00004761
AMCG00004763 mRNA upstream 199129 644608 ~ 646611 (-) False AMCG00004763
AMCG00004762 mRNA upstream 218046 663525 ~ 673875 (-) True AMCG00004762
AMCG00004760 mRNA upstream 232387 677866 ~ 688451 (-) True AMCG00004760
AMCG00004765 mRNA upstream 347550 793029 ~ 799872 (-) True AMCG00004765
TU179586 other downstream 307271 127778 ~ 130703 (-) True G142773
TU179583 other downstream 315447 119695 ~ 122527 (-) True G142770
TU179730 other upstream 198525 644004 ~ 646379 (-) True AMCG00004763
TU180047 other upstream 2264075 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 2693378 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 2693378 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 3668268 4113747 ~ 4116414 (-) False AMCG00004819

Expression Profile