RNA id: AMCG00004754


Basic Information

Item Value
RNA id AMCG00004754
length 4943
RNA type mRNA
GC content 0.45
exon number 7
gene id AMCG00004754
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 425272 ~ 434187 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGCGGGAGGTGAAACGGCAACATGGTGGCGACCAGGAGCGGCACGCGCGTGGAGTCTCCCAGCAGCGCCGCGTCGGTGCAAGCGCCCGCACGCGCGCCCGGAGGACAAGGAGAGCAGCGATGAAAGACTCGCAATCGGAGGCCAACAGTGACTCTCAGCATGATGATGCAGAGGACCCGGGTTTGGGTGATCTTCCAGGGCAGCTGCCGAGCTCCACTGCCAAACGCATCGCAAGAACCGCAAGTAGGCAGCCACGCCGGCAGGGTATGGGGTCCGCAAATGAGGCCGAGGTTTCGGAGGCAGAGTCCTGCTCCTCTGCCGTGTCTGCCTCACGGGGCAGCCGCAGGAACCGAGTTCTCCTGCGGGATCTATGGAGACCGGAGGAAGCTGATGTCTCGGAAGCAGAATCATGCTCCTCCTCCGTGTCTGCAGCCACCCGCAGATCTACCAGGAACCTCCGTACCAGGGTGTGTGAGCAGAGCCAGGCCTCCACTGAGCGCCCAAATGAGGAAGCGGAGATCTCTGAGGTAGAATCCTGTTGTTCAGACACGTTAGGGATGAAAGCCCTCGGAACTCGGAGAGTGACCCGGAGTCGGCGGAGTGTTGCTCCTTCCGGTACTGCACCCAAGCCCCCTACTGAAGACGCCGAGCTCTCCGAGGCAGAATCCTGTACTTCCGGTGTGTCCGGTCTGCAGGGTTCGGCCCTCCGCAGATCAGCGAGGACGAGGAAGGGGAAGAATGTGCTTCCTCTCCCTGAGTTTCTGAAGGAAGAGGGCAACACATCTGCCACCTCGTCTGTGTCTAGTCCCCGCAGACGGACAAGTAGAGCTTCCAAACTGCACCAGGAGCTGGAATGTGCAGATGTAGGAAGTCCGAAAAGAGCCACCCTCAGACAGACCACTTCCAAAGTCACCCAAGAGGAAATGGTCATATCAGACAGCGAGTCTGACATTTCTGTGACCTGCCTTGTCCCTGGGAGCCCTGCTTCCAGGAGAGGAATGGACATCAAGCCAGTGGTGGCCTCCAAGTCCCCCAGCAGTAGTCGTACTGGGTCAGGGAGCAGTCGCCAAACAATGTCACCCCCTGGGATCATTGCTGAGGAGGAGGCAGAACTCCCCTCATCTCCTGCTGCTTCTCCTAGTGTTCCAGTTGGGGCTGCAAAAGTAAGTGAGGGAGAACAAACACGGGAGAGCAAACTTGTACAAATAGTGGCATCCCCCAAAAGGACATGCCAGTCCCCTTTAGAGCTTGCCTGCCCAACTGAAAAGCCCACCACATTGAAGGCAGAGGAGAGAATGGAGGAGGAGGCATTGGAGAAAGTAGAGGAGGTGGCATTGGAGAAAGTGGTGGAGCAGGAGGCATTGGAGAAAGTGCCGGAGGCAGATGAGAAAGTAGAGGAGGCGGCATTGGAGAaagtggtggaggaggaggcagaggagagagTAGAGCAGGAGGCACTGGAGAAAGTGGCAGAGGAGGAGGCACTGGAGAAAGTGGAGGAGAGaatggaggaggaggcagaggagaaaGTGGAGCAGAGAGTAGAGGAGGAGGAAACCATGGAAATGGTGGAGAGGTCAGTGGCAGATGAGGGACCATGTAGCACTGCACAGGAACCACAGTGTGTGACATCCGCTACTGAAACATCACTAGCTGTCAGTTTGCTTTTGAGTAGTGGTGAGGATGAGGACGAGGGGGAGAGTAGTTTTCCTGAAGCCGGAGATGAGAAGGAGGGAAGCGCTTCAGACAGTGACGATGAGGCAGGCCCATCCACCTCCCAGACCAAAACCCAGCTCAATGAGAAGCACTCTGCGCTAGAAGACGATATGTTCATCATAGACACTCGGCCAGGGTTTCAGACTGATACAAAGTATTACCTGGATGCAGAAGGGGAGGACGAAGCAGAAGAGAGCGAACAAGATGAAGTGAGCGATAAAGAAGTAGACCAAGGAGAAGAAAGTGAAGAATTCATAGACGAAGAAGATGATGAGACTGAGATTCTGTACAAAAGCAAAAACCCAGCTTTGGCTGATCTCTCAAGCAGCATTGATCCAGGGCTAAATATGAAAGAGTTTGGGGGACTGTGTGTTAATCTTGAAGGTGGAAAAAAGAAGGCAGTCCCTAATCCCCTAAAGAAATTGAAGGAGAAACGCAATCAGGATGAGCTTTTAAAGAACAGCGTGATCACTccagattttgaaaagaaagatgCTGTACCACCATACCAAGAATCAAAGCGTCAGCTCAAGCTGAAACGCAAGGAAGAAAAAGCCAAGACCACCGGAGATGGCTGGTATAACATGAAGGCCCCTGAACTGACTGAAGAGTTAAAGAATGATCTAAAAGCCCTAAAGATGAGGTCAGCTATGGACCCCAAACGATTTTACAAGAAGAATGACCGAGAGGGATTCCCTAAGTATTTCCAGGTCGGTACGGTAGTGGACACCCCTGTGGATTTCTATCACGCACGCATTCCGAAGAAGCAGAGGAAGAGAACGATTGTGGAGGAGTTGATTGCAGACGCTGAATTCAGGAGttacaacaagaaaaaatacaagcaGATCCTAGTGGAAAAAGCCGACCTCTCCGCCGGGAAAAAGAATCGCAAGAAGAATAAATTTCGCAAGAAGTGATCCCAGCAGCAATGGAGCATCCTGGTCAGTTTGTTTAGAGAGATGCAAAGGACTACTCTGCTGTAGTTGTATTAATTTCTCTTACAAAGTAATCTAAAGAGTGCGAATGTCTACATTTTATCTCGATAAGATGAGGTATgatagaatatataaatatatatatgcacaataaatcagcatttttttaactgcaaatCATATTACCCTGTactcatgtctttttttttttattaatgccaaagaatacatttatttctcatttgtatttgttttttggattcAGCAGAGAAACAGTGTAAAGCTTAACTATAAGGAAGATGTATTCAAAGGAACTGTCGCAGTGATGCTTAATATGGAAGGACACATCATTTGGCCCAAAGCATTGAGATCTAAGTTTTTGAGCAGCACCCAAAGGATTTCAAAGGttgataaaataattgcaagAATGAGTACAGATTAAATCAGGAGCAATAGAGAGCAGGGGGGTAGCAATTTGATCATTCCACCACGAGGGGGCGTTGAAGTTTCTTACTCATGTAAGGAATCCACTGGATGATGAATCGGTAAGGTAATTTGGTAATCAAATAATCTAGAGAAATAGGTGATGGAGATGCAGAGGATCCCCAGGGCTAAGCgatggaatttattttttcaagtctAACATTATATAGGCTACAGAATAATCATCAATCTAGATAATGTTGTGAACtataagtctccctggataagggtgtctgccaagaaataaatgtgATGCCCCTTTGTCATGCCTACTTCTGTGCCTTTGCTACAGACTTCTCAATACACAGAAAGATGGGCAATTATACACAGGCCCTGTATAAGCCAAATCATTATTTGGATAAATTCAACAttgttgctgatcaatactagcaTTTGTTAGTTATAACTTAGTGGCCAtggatttgaatgcatttaacaacacaaaacagataaAAGGTGAACAATGTATGCTAAAACAGACATAcagtatatttcaaataaacaattcaaagtcgaatgtttaattttgttcatgTGTTTGCAGAATGTGTTCACCTTGTTCTGGAGGATCATCAAACAGATGCAGATTGtcttttgaaaaacatgtatttccacTTCAAAGTCACCTGACACCTGTTCGTAACTCTTAGATCTGTTTGTAGCATGTTATTCACCACAGCTTTGAATCTGTGATACTGTGAGACCAGGTATTACTCCAGTTATATACTTTATTGTATAGAGATCAGTGACCTGAATCAGTGTTGTCTACTATTAATAGTTTTATGATGCATCGCTGTTATTACAGAGAATTCCTCTCCCGTTTTATagccttcacacacacactaattcaTATGAAATCAGGAAGTACATGACATATTATTGCTCAACAGAATGAGGAAATTTAACTGTCAAACTGTTTCAGCTTAGGGCTGCACTTAGAAGTGTCTCCAGGGCTGTCTACAAGTTTACGTTAGACTGTTATTGAGGTAAGAAACGGAGAAtatcctttgttttgttgtgtgtgtatgtaaatgtaatatcttTCATTTCTAACATTTTCTAGTATTATATACAAAGCATCCTGTTATAGTTTTTTGGCAACTATAGTTTTACCATGTAGTTGTTTACTACAAAATGCACATACATTAAAcctgaaaatattttcaaaatgtatgaaagTTAAGTTCAATTCATTTTAAGAGAGTCCTAATCctccttgttttttgtgtaaatgGGGAAAAACGTATATTTAAGAATCTTTTCCATATCCAatcttttatttacatgttacCTGTACAGAAATTCAATCTTGCACTTAATTTAAGAACTTATACATGTTCATTAggaaactgttttatttataagcaTGTATTTTGTCAATTCAGAAATGGACAACTATTTTTGCAATCCGACTTAATATCCAATAGTGTGCTCActctccattttttttatttttttttattttttcttaagtaATGTTACGGAGGTGTGTTGCACTGAGTGCTCGTTATTGTGTGGAACTTAGTCGCAGCGATTCCTGGTTATTGGCTGATAGGATGTTacgtattaataataataatattttgaactTGGGGGAATTTAGGTGTTTGGCACAATCGattccctgccccccccctgGACCTCACTTCACGAGCACCTAccacacacccctccccccctgcCGCTAGACCTCACTTCAGCAGCACCacatccccacccccccatgaGTTAATTGCTCACAGATTCCCTGTTTGGCGTCTCTGTACacattctggactggggcaagagcggcACTTTGTACTGTC

Function

GO:

id name namespace
GO:0034660 ncRNA metabolic process biological_process

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179656 lncRNA downstream 73645 307116 ~ 351627 (-) True G142828
TU179579 lncRNA downstream 314780 109264 ~ 110492 (-) True G142766
TU179577 lncRNA downstream 316061 105040 ~ 109211 (-) True G142765
TU179753 lncRNA upstream 270103 704290 ~ 705016 (-) True G142890
TU179754 lncRNA upstream 298297 732484 ~ 732959 (-) True G142891
TU179766 lncRNA upstream 346231 780418 ~ 782340 (-) True G142902
TU179784 lncRNA upstream 354915 789102 ~ 792949 (-) True G142920
TU179825 lncRNA upstream 735826 1170013 ~ 1170516 (-) True G142953
AMCG00004755 mRNA downstream 2746 415362 ~ 422526 (-) True AMCG00004755
AMCG00004756 mRNA downstream 23230 377118 ~ 402042 (-) True AMCG00004756
AMCG00004752 mRNA downstream 60849 310864 ~ 364423 (-) True AMCG00004752
AMCG00004751 mRNA downstream 119438 266974 ~ 305834 (-) True AMCG00004751
AMCG00004750 mRNA downstream 204095 215361 ~ 221177 (-) True AMCG00004750
AMCG00004753 mRNA upstream 3787 437974 ~ 445479 (-) True AMCG00004753
AMCG00004761 mRNA upstream 125938 560125 ~ 584445 (-) True AMCG00004761
AMCG00004763 mRNA upstream 210421 644608 ~ 646611 (-) False AMCG00004763
AMCG00004762 mRNA upstream 229338 663525 ~ 673875 (-) True AMCG00004762
AMCG00004760 mRNA upstream 243679 677866 ~ 688451 (-) True AMCG00004760
TU179586 other downstream 294569 127778 ~ 130703 (-) True G142773
TU179583 other downstream 302745 119695 ~ 122527 (-) True G142770
TU179730 other upstream 209817 644004 ~ 646379 (-) True AMCG00004763
TU180047 other upstream 2275367 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 2704670 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 2704670 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 3679560 4113747 ~ 4116414 (-) False AMCG00004819

Expression Profile