RNA id: AMCG00004757


Basic Information

Item Value
RNA id AMCG00004757
length 3367
RNA type mRNA
GC content 0.50
exon number 9
gene id AMCG00004757
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 539775 ~ 557281 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTTAAGGACCCTCAAGCAGCTTGTTCCTATTTATGTGCAGTTCTCCAAGGACAAGTACATCATGGATGTCCCTCCGGAGAAGCTCCGcaaagagctggaggaggaaCTGAAGCTGAGCAGTGAAGAGCTGAGGAGCCACGCATGGTATCACGGAGCCATTCCCAGACAGGTATCGGAAAGCCTGATTCAGAGAGATGGCGATTTCCTCATCCGAGATTCCCTCTCCAGCCCTGGGAATTACGTCCTGACCTGCCAGTGGAAAAACAGCCCTCAGCACTTCAAGATCAACAAGAAAGTGGTGGCCATGAACGAGGCCTACTCCCGGGTGCAGTATCTCTTGGAGAGGGAGACCTTTGACAACGTGCCCTCCCTGGTGCGCTTCTATGTCGGCAACCGCAGGGCCGTATCCGAGGTGGTGGGGGCCATCATCTTCCAGCCCATCAACCGCAACCTCCCCCTGCGCTGCCTGGAGGAGAAGTACGGGGTGATGCCAATCAAGATCGAGCAATCAATGGCCGAGCAGAAAACGCCATCCAAGAGACTGAGCTTAAACATCATGAACGGGCACTCGCAGGACCACACACTCACCAGAGGAAACCTGCTAGGAAACAAAGACAAGTGTGGCAGCCAGCCTGCTTGTCTGAATCACGTAAGCGAGAGGAGACGACTTCTCAAGACACACCAGTCTGAAAGTTTCCTCCCCCTCGGGTCAAGGCACCAGCCCCAGTCCCAGCTGATTGAGCCACAGTGCAGCCCCAAGTCCCCCGTCTTCAGGACTGGGAGCGAGCCAGCCCTGAGCCCCACAGTGCCGAGGAAGATGGGCTTCGAAACGCGGGCTGGGGAGGCCATCCGGGGTTCTGACAGCCAACTGTGCCCCAAACCCCCTCCCAAGCCCAGCAAGGTGCCATCGCTGCGGCTCCCCGGCTCCCCCCGGCTCCCACACACCCAGCAGCACCTGCTGGAGGTCAACTACTGTGAGCTGAGCCCCTGCAGCCCGGCGGAGTGGGAGAGGCTGAGCCAGACCCACACGCAGCAGCCCTCCAACAGCTACGTGGAGAGGCTGAGGACAGAGGACCACAAGAAGAGTGCATATAGGCTGTCGGAGACCAACTTTTCCATGCTAGATCTCAACTCCTACCACCCGGCAATGGAGGCGGTGGCGGACAGgaacgaggaggaggagggggaaggcaagggaggaagagaggagcgGGGCAAAATGTCCAGACGGCTGCTCTTCGAGACTGTTTCAGCCTTCCGACCCAACGAGTTCGAGTCCAGGCTGCTGCCCTTGGAGAACAAGCCGCTTGAGATGACCGTGCTCAGGaaagccaaggagctgctggtCAACAAGGACCTCACCACCATTGCCAAGCACATCCTGCGGGCGGACTGCCAGGTTGCTAGGATTCTGAATGTCTCTGAAGAGGTCAAAGGGCAGATGGGCGTGAACTCTGGTCTGGAACTGGTTACTCTGCCCCACGGACGACAGCTACGACAAGATCTCATCGAAAGGCACAACACCATGACGATTGGGGTGGCGGTGGATATCTTGGGCTGCACAGGCAGTCTGGATGAGAGAGCAGCAACACTCAACAGGATCATCCAGGTTGCTGTGGAACTGAAGGACTCCATGGGAGACCTGTTTGCATTCTCTGCTATCATGAAAGCCCTGGACATGCCCCAGGTCACCAGGTTAGACCACACCTGGACCACGCTAAGACGGAAATACACCCAGACAGCCATCGTATATGAGAAATCACTCAAGCCTTGTTTTAAGGGATTATACGAAGGCAGTGTGGACGTTCCTCTCCATAACACAACCGTGCCCCTCTTGATGCCCCTGCTGACTCTGATGGAGCGTCCAGCGGTCACCTTCGAGGGAATGGACCTGTGGGAAAATAACGACCAAGGATGCGAAATCATGATGAGGCATTTAGAAGAAGCGCGAACGGTTGCCGAAAACGCAGACGCTTACAGTGCCAACGCTGAGCGCATTCTTCGAGATTTTAAGCCCAATGAAGACATGCTGGAAATCTTTAAGACTGACTTTCAGCTCCGGCTCCTGTGGGGCAGCAAAGGAGCGATGGTCAACCGAGCGGAGAGATACGACAAGTTCAACCTGATCCTAATGGCGCTGTCACGGAAACTGGAGCCTCTCGTCAAGCACACAGAACTCTGAGACGGGGAAACCAGAATGCaaatgggagagggagagagagagagaaacaaaaaagcaaaacctgAAAAAGAACAGCACTGGCCACCAATAGCCACCTTTCACCAGGGGGTCTTGGGTTTCGATGTTCGTATAGTTCCACAGGGTGCAATGTTCTTGGCCCACTGTGTCTTCACTGCAAGGGGACAGGGAAACCCAGCCTCATGGCTTGTCCCAACACTGATTTGTATAATTCAATAACTAGATCTTGATGTAAATTTATCAGATTCTTAAGCCAGCTGCAGGGTTGTCATTAAagagtttgattttaaattaaactggaaaGGTTTACGTCAATATTTTGTTGCAATTTGCCCATCACTGGATATAGAGTGGTTTGCTAGTGTGTACTGTAGGACTGGATTTTCACTTGCACCAGCTGGTATGGTCTTGCACTCCGGTTTCTGGTTCAGCTGAAGAGCCTTTAGGTCCGTTAGTTCACTTACCGGAGACTCCGCATACCCAACAGATAGTCGGACTACGTGAAAGGCTTGTTGGGGGAAAGTCTGTGTAAGTCTCGAAGGTGAACGGAAAAAACGTAAATACTTTCTTGTATGTATGCATCACTCAAGTTAGGGTGTCAATGTGTTTGAAAGacttgtaaatatatataacatgaaaaAAGGCAATTCCAGGCAATTGCAGAGATAAAATGATGAAAAGGAATTGTCCTTCTGTAAGGGACTGTGAGGATTTAAATTACACTCCTTTTCAAAGGGAGCTGGCATCCATGATATCATCTGCTACCTTTTGAAAAGgaactcaaaataaaacatgctgcTTAGCATTTACACATTACAACTTCATCATATCCCACTTTCTTAAccctgaaaaaaaatgtttatatatttgtctgtttataggcataaaaacatgtaaatacgTCTCAGTTAGGAGCCTGTTAATGCAAgattgtgtaatttattgtcctgctgaaatatCATTTACTTGTAAAtagggttacattttaattgtatctttGTATGGAatattgtagaaaataaatgttaagccATACAAGCAATCAAGCTACGTACTGGTTTAAGGCTTTTCATTTTACACCAAAAACTATTGCAATAATTCAttgaaataatagaaaaatgtttctttcacattatggagcagaaaataaaattgaaacatg

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
K23688 BCAR3, SH2D3B; breast cancer anti-estrogen resistance protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179669 lncRNA upstream 100554 435422 ~ 439221 (+) True G142835
TU179589 lncRNA upstream 270567 179387 ~ 269208 (+) True G142776
TU179582 lncRNA upstream 417253 116507 ~ 122522 (+) False AMCG00004749
TU179547 lncRNA upstream 429382 109314 ~ 110393 (+) True G142737
TU179699 lncRNA downstream 9102 566383 ~ 570143 (+) True G142847
TU179740 lncRNA downstream 110676 667957 ~ 701758 (+) True G142881
TU179774 lncRNA downstream 231757 789038 ~ 792943 (+) True G142910
TU179830 lncRNA downstream 732428 1289709 ~ 1289985 (+) True G142958
TU179850 lncRNA downstream 854676 1411957 ~ 1412207 (+) True G142973
AMCG00004759 mRNA upstream 31949 479846 ~ 507826 (+) True AMCG00004759
AMCG00004746 mRNA upstream 401522 134381 ~ 138253 (+) True AMCG00004746
AMCG00004749 mRNA upstream 416810 116491 ~ 122965 (+) True AMCG00004749
AMCG00004747 mRNA upstream 430572 48855 ~ 109203 (+) True AMCG00004747
AMCG00004748 mRNA upstream 509090 20381 ~ 30685 (+) True AMCG00004748
AMCG00004758 mRNA downstream 93421 650702 ~ 659789 (+) True AMCG00004758
AMCG00004774 mRNA downstream 849718 1406999 ~ 1407247 (+) True AMCG00004774
AMCG00004776 mRNA downstream 872237 1429518 ~ 1431810 (+) True AMCG00004776
AMCG00004775 mRNA downstream 877982 1435263 ~ 1457250 (+) True AMCG00004775
AMCG00004782 mRNA downstream 1933173 2490454 ~ 2490690 (+) True AMCG00004782
TU179968 other downstream 1883260 2440541 ~ 2520689 (+) False G143075
TU179967 other downstream 1991306 2548587 ~ 2559080 (+) True G143075
TU180082 other downstream 2565800 3123081 ~ 3124482 (+) True AMCG00004788
TU180081 other downstream 2565942 3123223 ~ 3124482 (+) False AMCG00004788
TU180140 other downstream 2820534 3377815 ~ 3395158 (+) True AMCG00004793

Expression Profile