RNA id: AMCG00004758


Basic Information

Item Value
RNA id AMCG00004758
length 972
RNA type mRNA
GC content 0.52
exon number 7
gene id AMCG00004758
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 650702 ~ 659789 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGCGGTGGTTTGTGGTTCTTGCACAGCAGGTGGTGCTTATATCCCAACCATGGCAGAAGAGACAGTGATGGTGCACAGAATTGGGACCATATTCCTGGGCGGCCCACCTCTGGTGAAGGCAGCGACTGGAGAAGAGGTGACACCTGAGGACCTGGGAGGAGCCAGACTTCATGCAGAAGTGAGTGGCTGTGTGGATCATTTCGctgctgaggaggaggaggcctaCGAATGCACCAGAAACATCATCTCTACACTGAACTTTGAGCTGCCTGTGGAGGGGGCAGAGGACAATAAGGAGCCTCTGTACAGTGTGGAGGAGCTGCATGGGCTGGCGCCAAGACATTACAGCTACAGTCTGGACATCAAACTGATTTTGAGTCGCCTGGTTGATGGAAGCAGGTTCCAGGAATTCAAAGCCCGCTATGGCACAACCCTGGTGACTGGTTTTGCACGAATTGAAGGACACCAAGTTGGAATTGTAGCGAACAATGGGGAACTGACTTATGAAGCAGCCCTGAAAGGCAGCCATTTTGTTCAGCTCTGTGACCAGCGTGATATCCCAGTGCTATTCCTGCAGAATACTCACCCCTCCTCACCAAAGACATTCTCCTTATCCCAGGCAGAGAGCAATACCAGCAGACTGAAGGCCCAGGCTTCTATGATGTCGGCTGTAGCCTGTTCGTCGTGCCCCAAGATCACAGTGGTAATAGGAGGCTGCCATGGAGCAGAAAGTTACGCAATGTGTGGCAGGTCATTTGAGCCCAACTTCCTGTTCCTGTGGCCCAGCGCCAGGGTGTCAATGATGGGTGCAGGGTACTCAGAGCAGcacgaagaggaggaggaggtgatcCACAAACAATTGCAGGAGGAGAGCTCTGCCTTCTTCTCCTCTGCGAGAATGTGGGATGATGGAGTGATTCTGCCTGAGGACACTAGGCAGGTAAAAAGTTACAATAAGATTCTAAAATAA

Function

GO: NA

KEGG:

id description
ko03018 RNA degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179699 lncRNA upstream 80559 566383 ~ 570143 (+) True G142847
TU179669 lncRNA upstream 211481 435422 ~ 439221 (+) True G142835
TU179589 lncRNA upstream 381494 179387 ~ 269208 (+) True G142776
TU179582 lncRNA upstream 528180 116507 ~ 122522 (+) False AMCG00004749
TU179547 lncRNA upstream 540309 109314 ~ 110393 (+) True G142737
TU179740 lncRNA downstream 8168 667957 ~ 701758 (+) True G142881
TU179774 lncRNA downstream 129249 789038 ~ 792943 (+) True G142910
TU179830 lncRNA downstream 629920 1289709 ~ 1289985 (+) True G142958
TU179850 lncRNA downstream 752168 1411957 ~ 1412207 (+) True G142973
TU179912 lncRNA downstream 1599940 2259729 ~ 2308874 (+) True G143029
AMCG00004757 mRNA upstream 93421 539775 ~ 557281 (+) True AMCG00004757
AMCG00004759 mRNA upstream 142876 479846 ~ 507826 (+) True AMCG00004759
AMCG00004746 mRNA upstream 512449 134381 ~ 138253 (+) True AMCG00004746
AMCG00004749 mRNA upstream 527737 116491 ~ 122965 (+) True AMCG00004749
AMCG00004747 mRNA upstream 541499 48855 ~ 109203 (+) True AMCG00004747
AMCG00004774 mRNA downstream 747210 1406999 ~ 1407247 (+) True AMCG00004774
AMCG00004776 mRNA downstream 769729 1429518 ~ 1431810 (+) True AMCG00004776
AMCG00004775 mRNA downstream 775474 1435263 ~ 1457250 (+) True AMCG00004775
AMCG00004782 mRNA downstream 1830665 2490454 ~ 2490690 (+) True AMCG00004782
AMCG00004783 mRNA downstream 1888818 2548607 ~ 2558673 (+) True AMCG00004783
TU179968 other downstream 1780752 2440541 ~ 2520689 (+) False G143075
TU179967 other downstream 1888798 2548587 ~ 2559080 (+) True G143075
TU180082 other downstream 2463292 3123081 ~ 3124482 (+) True AMCG00004788
TU180081 other downstream 2463434 3123223 ~ 3124482 (+) False AMCG00004788
TU180140 other downstream 2718026 3377815 ~ 3395158 (+) True AMCG00004793

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00069689 False 2107 mRNA 0.46 13 NC_007119.7 16676894 ~ 16688511 (+)