RNA id: AMCG00004760


Basic Information

Item Value
RNA id AMCG00004760
length 4213
RNA type mRNA
GC content 0.43
exon number 12
gene id AMCG00004760
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 677866 ~ 688451 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTTTGCTCGGAATTTCAAACTTTGTCGGTTGAATGGCGCTTCAGACAGAAAGATGCAGAAAGATGTCCTTCCGTAAGTGACGCGAAAAGACTACAGGACAGtgttaactgtatttaaaatgaacttccAGGAATCTCGCATCGTCACCCCGGGTCCTTACAGGGCTACGAAATTGTGGAATGAAGTCACAAAGCTTTTCCGTGCTGGgatgcctttaaaaaaacacaggcaACACTTCCGAGTTTTTGGCAACAGTTTCACTGCTGTGGCAGCTGCAGACTGGTTACATGAGCTCCTTAGAAACAATAGCAATTTTGGCCCTGAGGTTACCAGGCAGCAGACCCTCCAGCTGCTAAGAAAATTTCTTAAAAACCATGTAATCGAAGATGTGAAGGGAAGATGGGGTTCTGAAGACCTGGAAGACAATAGTCAGCTCTTTAGGTTTCCTCCAACATCACCATTAAAAGCAATTCCAAATCGACCATCGCCATTGAGGAAGAAAACGGCAGCCATTTCTACCAAGGATAAGGAGGGCTTTTTTGCTCAGTTATATAGGAGGAGTTCTAAAAAAATTGATTGTGACTCACAGGAAAACATTGATCCATTAATCCAAGAAGAGCCCACCAGTGCCCTTGAAAGGGAACAAGTACATAGCAGAGAAATAACCCAGGAAGATATTCATGATGTTTGGAGAAACATCACTCTAACGCAtttgcaTAAAACTTTGGGTTTGACCTCACTAGAAGATGTGATTGACCCAGCCCAAGTAAATCCTGAGCACATTGTGTACAACATGACCAATGTCAACAAGCATGGTGTTGTCACATTAGAGGACAAGTCAGGAGACCTACCTCATTGGGTTTTGTCTGCTATGAAGTGTTTGGCAAACTGGCCCAAGTATGATTCTAGCCAGCCATCCTATCCTGGGTTTGAGAGAGATGTGTTTAAAACGGTTTCAGATTATTTTCTAAACCTACCTCAGCCACTGCTCACATTTGAATACTATGAGTTGTTTGTCAACATTTTGGTGTGGTGTGGCTACATTGTGGTCCAAAAGCCTCAGTGCGGGAAACGCAAAAACCAGGAAGAGCCCTGCTATCCTCAGCCAGCCAAAACCCTGCACCTCAATGACAATAACCCTTTCAAATCGACCGAGTGCCTTTTGTTAAGCCTCCTCCGCAAGGAATCTTTAGATGAAAGCGAATCGCCAATGAAAGAGGTGCTGTGCTCTAATGTGGCAGCTAAGCACATGCTAAAAGGCTGTGAGAGGAGGATACAGCAGTATGGTGTGGCTGGTAGAAGAGCCAGTGACATAGTAGGCGGCAGCTGTCAGAACCTTTCAGGGTTTCAGAGCGGCGGATCCGTGCCCATGAAGTTCAGGCCGAGGTGTCATTCCCTGGAAGGAATTATGGACGTTTCTCACACCGGATCTTCGGCTTCTGCTTCACCGAGATCTTCAGAGAGCTTGTCTTTCAGTGGCACTGTGTTCAGAAGCTCCCAATGTAGAGCTGGCTCTCTGACTGACATTCGCCCACGGGCGGAACACCACGTTTCTGTTTCCACGACCAGCCTATTGCCCACCAGCGGCAGTGGAGCAGAAGTCTCCAGTTGCCAATCTTCTAGGGTTTGTACTCCATCATCCCAGAGAGTTCCCCCCGGAGAAAGTCCCCAGATTATCCGCTCCAAAAGCATCGGGAGCTGCGCTGATATCGGAGAGCATAAAGCACTCTCCTCCAGTTGCTTTAGCATCCACGCCCCTGTGGCTGAAATTACCATGAAGCCAGATTTTTCCTCCAGCATTGGCCTGAGGAGGCCCAGTGTGTTAAACTTAGCTGCCACCAAGAACCCCGGATGGAAAAGCGGGGCTGTGGGCAGACTCTACAAAAGCTCTTTGGATGTCTCTGAAAAGTTGCCCACTGTTCCAATATCCACTTTTGCACGTTACTTGAGTCCTGAACAAAGTCTTTTCCAACCCCAGTTGGAAAGGGTTGCAGTAGAAGCCCTCCAGCTATGTACTCTTCTGCTGCCTCCAGCTAATCGGCGTAGGCTGCAGCTACTCATGAGAATGATCTCGCGAATGAGTCAAAATGTGGACATGCCACGTCTCCATGATGCTATAGGAACTAGGACACTGATGGTGCACACTTTCTCACgttgtgttttgtgctgtgAAGAGGAAGTAGACCTTGATGAGCTCCTGGCCACACGGCTGGTGTCCTTTTTAATGGATCATCACCTTGAGATTCTTCAAGTTCCGGAGTACTTGATGACTGCTGTTCAGGACCATATAGACTACCTCAGGAAAGTTCAGaTTACATACCCAGGGCCAGGGGTCAGCGTCACTCTGCCTACCTACTCCTTCTGTAGACAGATCACCTCGCAGGAGTTCGAAGAACAAAAGCTTTCGGTCTCTCAAGCTGCCATTGCTGACCTCCTAGAAAACCTCATCAAGGACAAATCGTTATCtatgaaggagaaaaagaagaagcttAAGCAGtttcaaaaACAGTATCCAGACATCTACCACCGTCGGTTCCCAACCACAGAAAGTGAGGCCCAGCTTTTTGTTGATAAGCCAAAAATAAAGCCTCCAATGTTGCTGAACCTGAAGAGACCGAAAACACTTGGCATGTGGAACTGAAGGCATATCTGTTCAGTGTtcgtatatttattttacattggaaGTTTGCAAGTTGGAACTCTAAAGACCTTCACGAGGGACAATCAACAATCTCCTTTGGTTTGGGGAAGCTAATATAACATGTTTGTCCTGACATACTGACTATACTTGATCAGAGAGATTCAGAATTATattgtagattaaaaaaatactatattttgcTGAAGCTAGGAGGTATTTGAATGGTTAATTTATTCAGGGTTTAAATAAGAGATGTATGTATTCTCTGTAGGTAGCTGccgtttatatattttttaagctcTTTTACAAACGGGCGTAATTGAGTTACAATATGATGGGGTAAATATGACAATCTTGGGAGATGAATGAAGCCCTTTTTCTCAAGGCTATAGACTGACTGGGAATGCAGAATATCTGTGCATTTGTACACACTCCAATAACCAACGTGTCACTCCTTTTGAGTTTGTATTCCACGttctatttcattattttctgtgtgtgagtgtgtgtgatcaCAAGATTATTGCATcttaatgttttctgaaattcaCATGACATCCAAAGGAAGCTTTAATTTGTGTCTGTTAATTGTTTCATACATGGATTGCCCTTTGCTTTTAAGCACAGCAGGTAAGTTTTGGACTCCATGTTGATCATGTTCTGCCATGCACAGTCTGGAAGATGACATTGTTCTGCACTAGggtctgctttgttttgtttgtaacacAAAGCAATGCCAACAGAATTATTTACTTCTTGTTCTGGACATACTTGTTATATATTCTTTGACTTTGAAAACATTGCTGTAAATCAGATATATAACCTTCAATGCTGAATGTGAATAATTGTTCTATATTTCTAAAGGTTTACAAATGCTGTTTACaactttgtattaatgttttgaatgaCTAAAATGACATAAACATGGTTGCAGCTATTTAAGTGAACTGTAAGGGGAGCAGGTGATTATATGGGAGAAGGTTCAAAAGGCATTTGTCAAAGGTGTCAATGGCTGTGTTTTCATGTGAATATTGTGCTTTAAGTGAcaaattttaaattacagcagGTGCTTAACATTTTTGTCCTGGTGGGTTTGTTGTAATTTTTAGGGACTGCATTGGTATTGAAGTTCTCCAGTTGtcatgttattttgtgttttcagatcACATTATCATGGAAGTAGGCAATATTCAGAGCATGTCAGACTTTCGCTAAGGCTAAGCCATACTCGGAGTAATACCGCATGCCCATCTAGACAAAAAGGATAGGTGCTTGTCTCTGTACCCCTGCTCTTGTAATGCAGCCTATTGTCACTTAAGTTATAGAtttgtcactttttttcttcctcagtgAGATGTTTTCCTGTTACTCTTCCTGCACCttgagatttaaaatgtgtggttaTGCCCCGGGTTTCACATGACAGTTAGGCTATTCTCAgttgtttgtttcaaattgaTCTCAATTTAATATGTGACCTAAGGCCTCTTGTTTGAAGACCCAGGGAAGAGATGCATGTTTACACATACAAGTGAAAATTTcataaaagattaaacaatttttaaaaccatg

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179656 lncRNA downstream 326239 307116 ~ 351627 (-) True G142828
TU179579 lncRNA downstream 567374 109264 ~ 110492 (-) True G142766
TU179577 lncRNA downstream 568655 105040 ~ 109211 (-) True G142765
TU179753 lncRNA upstream 15839 704290 ~ 705016 (-) True G142890
TU179754 lncRNA upstream 44033 732484 ~ 732959 (-) True G142891
TU179766 lncRNA upstream 91967 780418 ~ 782340 (-) True G142902
TU179784 lncRNA upstream 100651 789102 ~ 792949 (-) True G142920
TU179825 lncRNA upstream 481562 1170013 ~ 1170516 (-) True G142953
AMCG00004762 mRNA downstream 3991 663525 ~ 673875 (-) True AMCG00004762
AMCG00004763 mRNA downstream 31255 644608 ~ 646611 (-) False AMCG00004763
AMCG00004761 mRNA downstream 93421 560125 ~ 584445 (-) True AMCG00004761
AMCG00004753 mRNA downstream 232387 437974 ~ 445479 (-) True AMCG00004753
AMCG00004754 mRNA downstream 243679 425272 ~ 434187 (-) True AMCG00004754
AMCG00004765 mRNA upstream 104578 793029 ~ 799872 (-) True AMCG00004765
AMCG00004764 mRNA upstream 145440 833891 ~ 835155 (-) True AMCG00004764
AMCG00004766 mRNA upstream 147791 836242 ~ 858506 (-) True AMCG00004766
AMCG00004767 mRNA upstream 185425 873876 ~ 945686 (-) True AMCG00004767
AMCG00004770 mRNA upstream 312085 1000536 ~ 1001328 (-) True AMCG00004770
TU179730 other downstream 31487 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 547163 127778 ~ 130703 (-) True G142773
TU179583 other downstream 555339 119695 ~ 122527 (-) True G142770
TU180047 other upstream 2021103 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 2450406 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 2450406 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 3425296 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 5048358 5736809 ~ 5783184 (-) True G143659

Expression Profile