RNA id: AMCG00004761


Basic Information

Item Value
RNA id AMCG00004761
length 3368
RNA type mRNA
GC content 0.45
exon number 14
gene id AMCG00004761
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 560125 ~ 584445 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTGCTACACCTTAACAtccaaacttttatttttcaggacCAATTTGACaaccttgaaaaacacacgcaatGGGGAATCGACTTCCTGGAAAGATATGCAAAGTTTGTGAAAGAGAGGACGGAGATTGAACAGAACTATGCAAAACAGTTGAGGAACCTTGTAAAGAAATATTGCCCTAAACGCCCCAAAGATGAAGAGCCAAGGTTTTCATCTTGTCTGTCCTTCTATACAATCTTGAATGAACTGAATGACTACGCAGGGCAGCGAGAGGTGGTGGCTGAAGAGATGGGGCACAAGGTCTACGGAGAGCTCATGCGTTATTCTCAAGAGCTCAAATCggaaagaaaacatAGTAAGAAGAAGTTTGAAAGAGAGTGCAGGGAAGCCGAAAAAGCACAGCTAAACTATGAACGATTAGATAATGAAGTTAATGCCACTAAATCTGAGGTAGAGAAGGCTAAATCCCAGCTGTACCTGCGGACACACATGGCTGATGAGAGTAAGAATGAGTATGCGGCTCAGTTACAGAACTTCAATGGGGAacaatggaaacattttaatgcGGCAATCCCCCAAATATTTAAGAACCTGCAAGATATGGATGAGCGGAGGACAGTGAAGCTGGGGGACAGTTACAAAACCTTTGCTGAGGTGGAACGTCGCGTAATTCCGATCATCTCAAAGTGTCTCGAAGGAATGGTATCTGCCGCCAAATCAGTGGATGAACGCAGGGACTCTCTGATAGTAGTGGAGTCTTTCAAATCTGGGTTTGAGCCACCAGGGGAATTTCCTTTCGAGGACTTCAGTCAGAACATCTACCGGACAGGCTCAGACGGAACCATCAGCACTCCCAAGATAGACTCCACTAAGCCCGATCCCAAGCATAGCATAGGGAAGGCCAAGAACAAACTGTGGCTGTTTGGGAAAAAGCCCAAGTCTCCACCCTCCTCCCCGCCCCACTCCTGCCCTTCCTTCACTTTCAGTGACATTCAGTCTCCCAAATTTGCCAGTGACCCTATAGCTTACTGTCTCAATGAAATGAAGACAGTGAAGCCCAGGATTTCATCATTTAGGGGGCTGAAAAGAGGGGGACCGACACTGGAAGATTTTAGTCACCTTCCCCCAGAACAGCGGCGAAAGAAACTTCAGCAGAGGATTGATGAGCTCGGCAAAGAACTGCAGAAGGAGGTGGACCAAAGAGATGCactgaacaaaatgaaagatgTTTATGAGAAAAGCCCCCAAATGGGAGATCCCGGGAGCCTGCAGCCCAAAATATCGGAGACCATGTGCAACATAGAGCGCCTTCGATCAGAGATCCACAAGAATGAGTCCTGGCTCTCTGAAGTTGAAAGCAAACCGGGCATGAGGGCCGACCGGCGTCCCAGTGCCGAGGTCAACCATCACGCTCCACACGGCAGAGAGAGCTACACAGAGGACCCAAGTCAGGAGCACAGAAGCCCCCCTCAGCCAGACCCCCATGAGTTTGACGACGAGTTTGAAGACGACGACCCGCTACCAGCGATCGGACACTGCAAGGCACTCTATGGCTTTGATGGTCAAAATGAAGGCACCCTGGTGATGCAGGAAGGGGAGGTCCTGTACATCATCGAAGAGGACAAGGGTGACGGCTGGACAAGGGCGAGGAAGCAGAGCGGGGAGGAGGGCTACGTGCCAACATCTTACGTAGACATCACGCTTGAAAAGAACAGCAAAGGTGCAGTTCCTGAGTGGATGTGTGGGTGTCTGTCAGAGGGCGAGTCAGTGAAGGAGGGCACATGCAGCTCTGAATTTATGAGTGTGTGGGCGGGGGGGTGTGAGATGTGGAGGGACGAGTGAGCAGGTTGCTTGTTTTGCATGCCGATATCCATTACCATTAACATCATCCCATCCCCAGTGTCCAGACAAACTACCTTTGATCTCCTGAGCCCAAAGAGAGACGATTGATGAATCACtcgaaaaataacaataacggTCATTCGTAACCTTCGCCATTAAAATATGATCTGGAAAGCGAATGTCTCCCTGTTTCCCTTCCCACCTGCCGTCGATTAACTTAAGGCAGCTTGGATTTCAAACCCTGAATGTTAACCAGACCTTGACCGGACTTAGAATTTCCTTTCCATCCAGTATTTGACAACTTGAAACCTCTGCCTGTGTGTCATTCTGCATCCTCGTGCCTAATATGTTGCCGCATGCGTAATAACTCCCTACACTGATGTTCAAAACTGTCGCTACAGCATCGCCTGGCTGTATCCATTTACACCTAATAGTTGTTTGTCATCGAGTCCCATTTGTATGTGTTCATGCTTTATTTAAAGTGGATTTACTTGTTAACAATCTGGTAATAAATTGTTTGATATGGTGGATAGTCTCTTAAAAGTTTggttcaaaatgcattttttagggttagggtaaactccttaatgcatattttgtaaacagatttttttcccccctttgcTTTTAACTCTTCCTTAATACAATCGGACAAGTATTACTACAGCTGttaaaaatgatacaatttttaaattgtttatgcACTGACCCAAGTCTTGCTACACACTATTATTAAGTAATCAAGAGTACTTAGTATCTAATAACCAACAGGGAATGTAATAAATACCCCAAAAGTCAATTCATTGATTTTTACAGCCACTGTACTAAAAGCAAACAACTGTCccttaaaataaagcatgaacTTTGTTTCCCCATCCCGTTTGAACATTCTCATTGTGGTacctttctttatttatggttttgtaTTGCGCTGCTTCAATACACCACGCATGAGCATGTCTGGTTAGACCAGTGCCAGAGCTGCAGTGACCAGGGCTGGTGGCTCTTTCACTGACACCCCCATCTCCGACCTCATTGACGCCCAGCCAAGGAATGACCAGCATCTTCACTGCAGCCAGTCCAGCCCCAGCTCGACATACCTGGAGTCAAAAGCATGAAGCATCtggagttgttgttgttgttattgttgttgttgtttttttctttcattcttttttttattatttttttatttcttcctcctcttctggACTAAAGGTTAAAAAAGACCAAACACCACTGAAACTACAAACTCTGTGCAAACTTTGCCTTAACACAACGGTGGAAGAGTGCCTACAGTCTGCCGAGTGCCAACCCAATTACAGTAACGCAACAAGGGCTTGTTTCACCGTTGGCTCACCGCACTGCATTCTGGGAGTTTGTCAagcgctttctctctctccccttattttttttccctttcattacCTCGCATACATAATCTAATTTTCTAGTATGAGTATGCAGATCAGCTTCCAAAATTTGTGCAactcattttcattatttttaaatatacacacacacac

Function

GO: NA

KEGG:

id description
K20121 FNBP1; formin-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179656 lncRNA downstream 208498 307116 ~ 351627 (-) True G142828
TU179579 lncRNA downstream 449633 109264 ~ 110492 (-) True G142766
TU179577 lncRNA downstream 450914 105040 ~ 109211 (-) True G142765
TU179753 lncRNA upstream 119845 704290 ~ 705016 (-) True G142890
TU179754 lncRNA upstream 148039 732484 ~ 732959 (-) True G142891
TU179766 lncRNA upstream 195973 780418 ~ 782340 (-) True G142902
TU179784 lncRNA upstream 204657 789102 ~ 792949 (-) True G142920
TU179825 lncRNA upstream 585568 1170013 ~ 1170516 (-) True G142953
AMCG00004753 mRNA downstream 114646 437974 ~ 445479 (-) True AMCG00004753
AMCG00004754 mRNA downstream 125938 425272 ~ 434187 (-) True AMCG00004754
AMCG00004755 mRNA downstream 137599 415362 ~ 422526 (-) True AMCG00004755
AMCG00004756 mRNA downstream 158083 377118 ~ 402042 (-) True AMCG00004756
AMCG00004752 mRNA downstream 195702 310864 ~ 364423 (-) True AMCG00004752
AMCG00004763 mRNA upstream 60163 644608 ~ 646611 (-) False AMCG00004763
AMCG00004762 mRNA upstream 79080 663525 ~ 673875 (-) True AMCG00004762
AMCG00004760 mRNA upstream 93421 677866 ~ 688451 (-) True AMCG00004760
AMCG00004765 mRNA upstream 208584 793029 ~ 799872 (-) True AMCG00004765
AMCG00004764 mRNA upstream 249446 833891 ~ 835155 (-) True AMCG00004764
TU179586 other downstream 429422 127778 ~ 130703 (-) True G142773
TU179583 other downstream 437598 119695 ~ 122527 (-) True G142770
TU179730 other upstream 59559 644004 ~ 646379 (-) True AMCG00004763
TU180047 other upstream 2125109 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 2554412 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 2554412 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 3529302 4113747 ~ 4116414 (-) False AMCG00004819

Expression Profile