RNA id: AMCG00004762


Basic Information

Item Value
RNA id AMCG00004762
length 1389
RNA type mRNA
GC content 0.47
exon number 12
gene id AMCG00004762
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 663525 ~ 673875 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTGAACATCCCGCTGGTGGCTACAAGAAAATATTTGAGACGGTGGAGGAACTTTCAGAACCAATTCCAGCCCAGGTTACAGGAAGAATTCCTCCTTGGATAAAGGGTAGTCTGCTGAGACTGGGGCCTGGTCTGTTTGAGGTTGGGGACGAGCCATTTTATCACCTGTTTGATGGCCAAGCCCTCTTGCACAAGTTTGACTTCAAGAATGGACAAGTCACCTACCACCGAAAatttCTGAGAACAGATACATACGTGAGAGCAATGACCGAGAAGAGAATTGTCATCACTGAGTTTGGCACCTTCGCCTTCCCTGATCCCTGCAAGAACATTTTCTCCAGGTTTTTCTCTTACTTCAAAGGCATTGAGGTCACAGACAATGCCCTGGTAAATGTGTATCCTGTAGGAGAGGACTTTTACGCTTGCACAGAAACAAACTACATTACAAAAGTCAACCCTGAGACTCTGGAAACAATTGCAAAGGTGGACCTGTGCAACTATGTTTCCATCAATGGGGTGACAGCCCATCCACACATTGAGAAAGATGGCACAGTGTACAACATTGGAAACTGTTTTGGCAAAGGCATGTCCATTGCCTACAACATTGTCTCCATCCCACCTACCCAGAAAGGCACCCAGAAATTTCAGCAGACATGGTTTCATCTGGCCACTAAGAAAACTGGAGAATATCAGAAGGTGAAATTCCGGACTTCAGCAATTAACCTCTTTCATCACATCAACTGCTATGAAGATGATGGCTTTATAGTAGTGGACCTGTGCACCTGGAAAGGGTTTGAATTTGTGTACAACTATCTCTACCTGGCAAACCTGCGGGAAAACTGGGATGAGGTAAAGAAGCAGGCCATGATGGCTCCTCAGCCGGAAGTCAGAAGATACGTGCTTCCTCTTGATGTAAACAGGgagGAGCAGGGCAAGAATTTGATCTCCTTGCCATACACAACAGCCACAGCCACCATGTGGTCAGATGGCACAGTGTGGCTGGAGCCTGAAATCCTGTTCTCTGGACCTCGCCAAGCTTTTGAATTCCCCCAGATCAACTACAAGAAGTTCTGTGGAAAGAACTACACCTATGCCTATGGACTGGGGCTGAACCATTTTATTCCCGACAGGATCTGCAAGTTGAATGTGAAGACCAAGGAAACATGGGTTTGGCAGGAACCAGATTCCTACCCATCTGAGCCTATCTTTGTGGAAACTCCTGATGCGGTAGAGGAAGATGATGGGGTTATCCTGACAATAGTGGTGAATCCTGGAGCTGCACAGAGACCAGGCTACCTGCTGATATTGAATGCCAAGGATCTGACTGAAATTGCACGGGCCGAGGTTGAAGTCATCATACCAGTGACCTTCCACGGCATGTATAAACCC

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K11158 RPE65; retinoid isomerohydrolase / lutein isomerase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179656 lncRNA downstream 311898 307116 ~ 351627 (-) True G142828
TU179579 lncRNA downstream 553033 109264 ~ 110492 (-) True G142766
TU179577 lncRNA downstream 554314 105040 ~ 109211 (-) True G142765
TU179753 lncRNA upstream 30415 704290 ~ 705016 (-) True G142890
TU179754 lncRNA upstream 58609 732484 ~ 732959 (-) True G142891
TU179766 lncRNA upstream 106543 780418 ~ 782340 (-) True G142902
TU179784 lncRNA upstream 115227 789102 ~ 792949 (-) True G142920
TU179825 lncRNA upstream 496138 1170013 ~ 1170516 (-) True G142953
AMCG00004763 mRNA downstream 16914 644608 ~ 646611 (-) False AMCG00004763
AMCG00004761 mRNA downstream 79080 560125 ~ 584445 (-) True AMCG00004761
AMCG00004753 mRNA downstream 218046 437974 ~ 445479 (-) True AMCG00004753
AMCG00004754 mRNA downstream 229338 425272 ~ 434187 (-) True AMCG00004754
AMCG00004755 mRNA downstream 240999 415362 ~ 422526 (-) True AMCG00004755
AMCG00004760 mRNA upstream 3991 677866 ~ 688451 (-) True AMCG00004760
AMCG00004765 mRNA upstream 119154 793029 ~ 799872 (-) True AMCG00004765
AMCG00004764 mRNA upstream 160016 833891 ~ 835155 (-) True AMCG00004764
AMCG00004766 mRNA upstream 162367 836242 ~ 858506 (-) True AMCG00004766
AMCG00004767 mRNA upstream 200001 873876 ~ 945686 (-) True AMCG00004767
TU179730 other downstream 17146 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 532822 127778 ~ 130703 (-) True G142773
TU179583 other downstream 540998 119695 ~ 122527 (-) True G142770
TU180047 other upstream 2035679 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 2464982 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 2464982 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 3439872 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 5062934 5736809 ~ 5783184 (-) True G143659

Expression Profile