RNA id: TU179730


Basic Information

Item Value
RNA id TU179730
length 799
RNA type TUCP
GC content 0.52
exon number 4
gene id AMCG00004763
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 644004 ~ 646611 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAGTCGGCGCGGAGCTGAAGTTGTTGATTCTTGTAAAACTGGGCTTTGGTGGCGTGTAGCTTCGAAGAAAGATGTACAAAAGCATCCTAGCAAGAAGTCTGCGGACAGAGGCGAGACTGATTCAAGGATTGATCTCTTCGTCTTCCGAAACAACGAACTCAAAGCCCTTGAACAACAGCACCGCGAAATGCAGAAGACAGCACTGCACACGGACATGGCGCCCGGCCGCCCCCCGGCCGCAGAGTTTAAAACGGGCAGCGGAGAGACAGCAGCGCCAGATACCGCAGTGTTTTATTAGCTCTGTGCCGACGAGGAAGAAGACCTTGCCCTGCGCCTTTCCAGTTTTAGAGCAAGACGTTCAGCCAATCCATAGGCATGTTTATGAGGCAAACGCACGCAACAGCGCAGTTTGTTATCAAAGGTATTGGGAGTGCATAGAAAAGGTGCGAAGGGGCGGAGGCGAGAATGCCATCGCTAGGCACACGCAGAGGAACAAGAAGCTCCTGGTCCGGGAGAGACTGCGGCTTCTATTGGACGATGAGGATTACCTGGAGCTGTCACCCTTTGCAGGGCTGGATTTGCCTTACGGGAACGTGCCATCAGCAGGGTGTATTACGGGCATTGGTAAAATCTGCGGCTTGTGGTGTGTCTTTATTGCCAATGATGCCACCATAAAAGGCGGTACAGCTTATCCCATTTCTGTGAAGAAGCAGCTGAGAGCCCAAGATGTAGCTGTGCAGAACCGTCTACCTTGCGTGTATTTAGTGGACAGTGGAGGCGCATTCTTACCTCTTcagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179656 lncRNA downstream 292377 307116 ~ 351627 (-) True G142828
TU179579 lncRNA downstream 533512 109264 ~ 110492 (-) True G142766
TU179577 lncRNA downstream 534793 105040 ~ 109211 (-) True G142765
TU179753 lncRNA upstream 57911 704290 ~ 705016 (-) True G142890
TU179754 lncRNA upstream 86105 732484 ~ 732959 (-) True G142891
TU179766 lncRNA upstream 134039 780418 ~ 782340 (-) True G142902
TU179784 lncRNA upstream 142723 789102 ~ 792949 (-) True G142920
TU179825 lncRNA upstream 523634 1170013 ~ 1170516 (-) True G142953
AMCG00004761 mRNA downstream 59559 560125 ~ 584445 (-) True AMCG00004761
AMCG00004753 mRNA downstream 198525 437974 ~ 445479 (-) True AMCG00004753
AMCG00004754 mRNA downstream 209817 425272 ~ 434187 (-) True AMCG00004754
AMCG00004755 mRNA downstream 221478 415362 ~ 422526 (-) True AMCG00004755
AMCG00004756 mRNA downstream 241962 377118 ~ 402042 (-) True AMCG00004756
AMCG00004762 mRNA upstream 17146 663525 ~ 673875 (-) True AMCG00004762
AMCG00004760 mRNA upstream 31487 677866 ~ 688451 (-) True AMCG00004760
AMCG00004765 mRNA upstream 146650 793029 ~ 799872 (-) True AMCG00004765
AMCG00004764 mRNA upstream 187512 833891 ~ 835155 (-) True AMCG00004764
AMCG00004766 mRNA upstream 189863 836242 ~ 858506 (-) True AMCG00004766
TU179586 other downstream 513301 127778 ~ 130703 (-) True G142773
TU179583 other downstream 521477 119695 ~ 122527 (-) True G142770
TU180047 other upstream 2063175 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 2492478 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 2492478 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 3467368 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 5090430 5736809 ~ 5783184 (-) True G143659

Expression Profile