RNA id: AMCG00004764


Basic Information

Item Value
RNA id AMCG00004764
length 1073
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00004764
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 833891 ~ 835155 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCACTTAAGATGGGCATCTTATGGATGAATTTGTTCTTGTTATCAATGTGTGCAATAGAGTGTACAATGCAGCTAGTGGTCCTCATGTGTCTACATGTTGGACTCCAGGAAGGGTTTCAAATAACAGATGAGAAGGAGGCTGCTCCTGGGTTGGACAAAGTAACTTCAAATCTGGGATTCCAGTCTCCTCCTGGCTCTAAAATAAATAGACCTCTTGAAAGAGATGTTGGGGGTGGGAAAGAGTCTGATCAAGGAGAAAATGAAACCTCTACTGATCACCTGGCCGATTTCCTTGATCGTGATGGTGCTTCTGGAGATGATGGCCTTGTAAGTAGTGAGTGGTACAATATGTCTGAAGATGCTAGCCTTGCCAACTCTCCCACCTCGGCTGAGGTTCCAAGTAACCACTTGCTGGATCAAACCCCGCTGGAGGGTGTAGATGAACCCATTCCTGACGATGAAGTACCTAACTTTGAAGTACTCTTCCGGCCCAAGACCAAATCTGCCAATGTTGAGGACACTCGACCACCTAGCTCTGGGAGTGAAGTCTTCAACTCTTCAAGTTCTACTCAGGAGGCTGTTAAGATAGCTGGTGGTAGTGGGACCAGTGCAGATGGACAGTCTGTTTCACACTCTTCCTTACGTGCTACTAATGATACAAAATCGAAGGTGCATCGTCATCCTGATCCTAATGTTGAGGATGATGATCAGGAACCTGAGCTTGAACCTATGGCACAGGATGTCTTCATGGATACTGAAGTCCACCCATTTTCTATTTCACATTCCTCCAATTCTGTCTCTGATCAATTTCTAAACCAGCGCTACAGGTATGGCATATTTGGGGAGACTGGCTATCGTGGCTATGCCTTTGACCAGCACTTTGACTGGGATGTGGAAGACTTTGCCCTTGGTAAATCTGTTGATTTTGACTCTCCGGATGCTGATTGGTTCTCTGCATATGGAGGTGAGCTGGATGAGAATGAATATGAGGAACCTCACTTTCCCTAGCTATGAATTCCACTTGGAATCCTTATGTTGAAGATGTGGTGTATAACTTTTGAATCTTCCTAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179784 lncRNA downstream 40942 789102 ~ 792949 (-) True G142920
TU179766 lncRNA downstream 51551 780418 ~ 782340 (-) True G142902
TU179754 lncRNA downstream 100932 732484 ~ 732959 (-) True G142891
TU179753 lncRNA downstream 128875 704290 ~ 705016 (-) True G142890
TU179656 lncRNA downstream 482264 307116 ~ 351627 (-) True G142828
TU179825 lncRNA upstream 334858 1170013 ~ 1170516 (-) True G142953
TU179831 lncRNA upstream 454509 1289664 ~ 1289985 (-) True G142959
TU179843 lncRNA upstream 544725 1379880 ~ 1380879 (-) True G142967
TU179849 lncRNA upstream 551268 1386423 ~ 1386687 (-) True G142972
TU179873 lncRNA upstream 692423 1527578 ~ 1527810 (-) True G142990
AMCG00004765 mRNA downstream 34019 793029 ~ 799872 (-) True AMCG00004765
AMCG00004760 mRNA downstream 145440 677866 ~ 688451 (-) True AMCG00004760
AMCG00004762 mRNA downstream 160016 663525 ~ 673875 (-) True AMCG00004762
AMCG00004763 mRNA downstream 187280 644608 ~ 646611 (-) False AMCG00004763
AMCG00004761 mRNA downstream 249446 560125 ~ 584445 (-) True AMCG00004761
AMCG00004766 mRNA upstream 1087 836242 ~ 858506 (-) True AMCG00004766
AMCG00004767 mRNA upstream 38721 873876 ~ 945686 (-) True AMCG00004767
AMCG00004770 mRNA upstream 165381 1000536 ~ 1001328 (-) True AMCG00004770
AMCG00004769 mRNA upstream 179189 1014344 ~ 1071694 (-) True AMCG00004769
AMCG00004772 mRNA upstream 239295 1074450 ~ 1108517 (-) True AMCG00004772
TU179730 other downstream 187512 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 703188 127778 ~ 130703 (-) True G142773
TU179583 other downstream 711364 119695 ~ 122527 (-) True G142770
TU180047 other upstream 1874399 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 2303702 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 2303702 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 3278592 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 4901654 5736809 ~ 5783184 (-) True G143659

Expression Profile