RNA id: AMCG00004766


Basic Information

Item Value
RNA id AMCG00004766
length 4589
RNA type mRNA
GC content 0.44
exon number 13
gene id AMCG00004766
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 836242 ~ 858506 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCAAAATGGATGTGGAGCACATCATAACCAAGAAAATGCAGCTCAAGATGAAAGCTGAGCATCTAAAGATGGACCTGATGAAGCACTTTGACTGCCAAGTGAACGAGTTTGTGGACAATCTGATCGAGGAGTCGGCCGGCCTGGAGTCTCCCTCTGTGCCCTCTGTGTTCTCTGCACAGCTGACTGAGAAAGAGAGGAACAAACTGAgGCATCTGCGATCCTCCCCGGATCATGGCAAGCTGTTTGTGACCCGCCGCTCCTTGTTAGAcGAGCTTTTTGAAATCAATCACATTCGAACCATCTACCACATGTTCATCGCTCTGCTCATCCTCTTCATCATCAGCACCCTGGCCATGGACTTCATCGATGAAGGACGcctaGTGCTGGAGTTTGACCTGCTGGTGTTCGCCTTCGGCCAGTTTCCCCTGGTTGTGTCCACATGGCTGTGCATGTTCCTGTCTGCGTTCATCGTGCCGTATGGCCTGTTCCACCTCTGGGCCCGACACTACCGCTCCTCCCGGCACCCCCGCCTGCGCTCGCTGCTGGCCGGCTCCCTCTTCCTGCTCTTCCAGGTGCTGGGCCTGGGCTTCCTGCCCACCTATGTGGTGCTGAAGAACGGGTTACCGCCTGCTTCACGCTTCATCGTCATCCTGGAGCAGgtTCGCCTCATCATGAAAGCCCATTCGTTCATCAGGGAGAATGTGCCCAGAGTGCTCTCCTCCACCAAGGAGAAGAACAGCTCCCTGCCGATCCCCCAGGTGTCTCAGTACCTCTACTTCCTATTTGCACCAACGCTCATCTACAGAGACCACTATCCCAGGAACCCGTCGATTAGATGGGGGTATGTGGCAACCAAATTCTTACAGGTGCTGGGCTGCCTGTTCTATGCCTACTACGTGTTTGTACGCCTCTGCATCCCTCAGTTCAGGAACGTGAGCCTACAGCCATTCAACCTGAAGGATTGGTGGAACTCAACATCTTTTGCCAATTACTACCGAACCTGGAACGTCGTGGTTCACGATTGGCTGTATTACTACGCCTACCGGGACTTCCTCTGGTTGTCAGGGAAGAGGTTCCGCGCGGCTGCCATGCTGTCCGTGTTCACCGTGTCTGCTGTGGTCCATGAGTACGCACTGGCCATCTGCTTTGGCTTCTTCTACCCCGTTCTCTTCTGCATGTTTATGTGCTTCGGAATGATGTTTAACTTCATCCTACATGACCGGAGGAAAGGACCCATCTGGAATATCATCATGTGGACCTCCTTGTTCTTGGGGCAGGGCGTGCTGCTGTGTCTGTACTCCCAGGAGTGGTATGCCCAGCGCTACTGCCCGATACAGAACCCCTGCTTCTTGGACCTGCTGAAGCCACGATCCTGGATTTGCAACCAACAAGTATCGTTGACTGGACCCGCCGACTGAACCACCGGATCCAGTCCGCTTTTATGAACCAAATGAatgtgatgttttcttttatactttttcttttttttttttcttccccccctttcctttgtgttctgttttgccTTCTCATGATTTACCACCTTGTGCCTGGACTTCACTGAGAGGGACTCCGACCCTCTGCCTGGACGCTGTCCAAACACCTGTTTAGCAACTCCGTGCTCTCTTGTCCCAGagttttcaaaaggaaaagcaaGTTGCTCCCACAGCCTATTGCAGGGGGACAGAAACCTTGCATCGAAGTATTATGTGACTCTTTGGGGGTACGGGCATTCCACTCGGATCCGCTTTGGGTCACAGTACCATTCTGTCCTCCTCTATAAACTGGGGCTGAAAGTCACcttttaaacctttatttttatttaattttaatattccaATTAGAGATTAGGTCCCTAACCTAATGATGTCGATGACCGTGCTGTTCTATATGTGCGTATACCCCATGGTTTGTGGCTCTTGAACATTCCTGCGCTCTCTGTCACCCCGGTTTCATAGTCCCTCGCATTCCCGCTCAAGACCAGGGGCAGTATTGGAGATCAGATTCCTCCTACGCACAGTTCTACGTTGGGACATGATGCGTCTGTCTCTTTTTGCGTGACGAGTGAATTACAGTCACTCGTGAAAGGAAACGAATGCCGAATTCAGAAAATGAAACCACAGATCAGTTGGAGCCAGTGCGCATTGTAAAAGTCAGTCTGTCCGATGATGGCTAGTTTAAAGAGACTTCTAATGTCCAGTATTTCTACTTTGTTCTGACTACatctaagatttttttttttttttttttccccccaagacAAGGAAGACGACCTTCACGCCCTTTCAGTTGGGATACACTGTATACATGGGGGAAACTCTAGCAGTAGGCTGGTCCACAGGTgtactgtttaaaaatgaaccTGTGTGTCATGGATTCTGGTAATATCAGTCATATTATCCTTATTGCCTCTCAGTCAAGTCATTTAAAACTTTGCTGATGTTTTCTGTGAACTAATGTGCATACATCTACTGCGTTTGTAGTCCTGTAATCCTTTGAGGCTCCACCTACTCCTGTTTTTGCAGTATCGTCTGGTCTCTGGGATCAGGGCTGTTGGAAGTGTAATACCGATGTACTTTGATGAATGTAAGTTTGTGTATGAAGCAGCTATTTACcagaccccccctccccccaggcTCAGACACCGATGGGATCAGACTTTGTTGTCCCATTACCACCTACCGCTGGCAAATGAGGTTCACTGCTCCTCCACTGCAGAGAGCAACTGCGGCCAGAAACGGGCAGATACTGGGGCGATCATCGTGACCCTCTTTTTCTCAATCACATGTCACTTTTAATCCATTCTGGTCAGATGAGAATGTGTTGCTGTAGGCAGTGAATATAATCCCACGATACTAGCCTACTGCACAGATTCAAAAATATTATAcctcaatataaatatatgaattaattcCATTTTACAATTATGACTGTAGGGTTTAAACTGAGGGTCTGCTTACACAGCATTAATGTTGCACTGTGGTGCATTGAAAAACTCAGACTGCTTTGTGTGGCTTCCGGGGGCAGGTGGAGAAACTCAGTGGCTGAACCAGGGGAGAGGGAAGGGCAACATACAAACCAGGGAGGATCTCTTATACTTTGCTCCAAAGTGTCTTGCGTCCTTTAGAAGTGTGCAATTCTGTATGTGTATCCTAGTTCTCTGGCAGGTGTTAATACAGCTGCAGCTGGCTGCAGATACTTTACAAAATAGAACATGTTTATGATCGACACCTACCGAGAACTGTGCCAAAATGCTTAGCTAATTTCTGTTTAGATGTTGGCACTCGTTTGGGGCAATAGATCAATAGATTGCAATGTTTCCTGTATGTAAGGATTTAAGACTTTCTGAAATCTAAAGAAGGCAATTGAATGGCACTGTTGAAGGGACCAAACCTATCATACACAGAGGGtacatattacaaatactgCAATCATGCTGTAAGTCCGTAAGAAGAGACCTGTAGTGTCTGTCCATCATGCACATCATCACTACAGCCTTTAATGAGCAGAAACCTGAGGTTAGATGTTAGAAACCGTTTTATGTTTGGGGCCAAAAACCTATAGCAGTGATTTGTGGGAGGGTGATGGCCTTGCTCTGGTGAATACTTGTTTAAACGTAAGGTGGGGGtgaagtgcaaaaaaaaaaaaaaaaaaaaatgcatttaagtttAAATGTGTTGGCTTTGTGCTTTACTCAAGAGCCATTGAATGTCTTGTGATTTAGTGTCAATCAAACGAGGGCTTATTGGAAAACAAGGTGTCTTTGTATGTTTCAAAGGTTGaggttgttattgttattgttgttattattattattattattattattattattattattattattaataatattaatattgtggtggtggtggtgttgaaTCCTACCCCCATCGCCTCCTTTGCTCAGTGTGAATAAGCACAAAGAGTCCTAAAGCAATGCAATAGACTTTTGTTGTCCAAAACCAGCATCAAAGTGTGTTCACTGTAGATACAATATGAAGTGCCCTAGTCCTCGGGCAGGTCTGGTGCAAAAGGGTTTTGTCTTTCGTGATTATTCGATTTTATTAATGCAGATAGAATCTATGGAGGCAGAAACTTTAAAGCATTtcataaagaatgaaaaatcagttttccacaaaatgtaaattgacGGTGTGATGGgaaatataaatctatatattttcatatgaatattatatatgGGGGAAGGTATCCTTATCAAACGTACTGATACCTACTCTACTATTTACtatgaaagtgctttgaaataaaaCGGGAATACAAGTTGTAACACATTCAAGTAAACTACTGGAAAAATGTGATCACATGTGGGCATAGCCACTGTATAAAATATGAAGGTTGAAATTGTGACtgttacactttttttgttgtgttacaaaatatgtacttttttaaCTTGCATTCCATACTTATGTTGTGATTTGtaacctgtaatttaaaacaaatctgtatattGCACTGTTTTGCTAATTTTGTTTTGGAGGTATTTGGAACAGATCAATTCCCTTCTATATTCATGTGTATACAGTACTACAATAAAGCTTAGCATTACCCGTTTAATAGTA

Function

GO: NA

KEGG:

id description
K00637 SOAT; sterol O-acyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179784 lncRNA downstream 43293 789102 ~ 792949 (-) True G142920
TU179766 lncRNA downstream 53902 780418 ~ 782340 (-) True G142902
TU179754 lncRNA downstream 103283 732484 ~ 732959 (-) True G142891
TU179753 lncRNA downstream 131226 704290 ~ 705016 (-) True G142890
TU179656 lncRNA downstream 484615 307116 ~ 351627 (-) True G142828
TU179825 lncRNA upstream 311507 1170013 ~ 1170516 (-) True G142953
TU179831 lncRNA upstream 431158 1289664 ~ 1289985 (-) True G142959
TU179843 lncRNA upstream 521374 1379880 ~ 1380879 (-) True G142967
TU179849 lncRNA upstream 527917 1386423 ~ 1386687 (-) True G142972
TU179873 lncRNA upstream 669072 1527578 ~ 1527810 (-) True G142990
AMCG00004764 mRNA downstream 1087 833891 ~ 835155 (-) True AMCG00004764
AMCG00004765 mRNA downstream 36370 793029 ~ 799872 (-) True AMCG00004765
AMCG00004760 mRNA downstream 147791 677866 ~ 688451 (-) True AMCG00004760
AMCG00004762 mRNA downstream 162367 663525 ~ 673875 (-) True AMCG00004762
AMCG00004763 mRNA downstream 189631 644608 ~ 646611 (-) False AMCG00004763
AMCG00004767 mRNA upstream 15370 873876 ~ 945686 (-) True AMCG00004767
AMCG00004770 mRNA upstream 142030 1000536 ~ 1001328 (-) True AMCG00004770
AMCG00004769 mRNA upstream 155838 1014344 ~ 1071694 (-) True AMCG00004769
AMCG00004772 mRNA upstream 215944 1074450 ~ 1108517 (-) True AMCG00004772
AMCG00004771 mRNA upstream 283854 1142360 ~ 1150290 (-) True AMCG00004771
TU179730 other downstream 189863 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 705539 127778 ~ 130703 (-) True G142773
TU179583 other downstream 713715 119695 ~ 122527 (-) True G142770
TU180047 other upstream 1851048 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 2280351 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 2280351 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 3255241 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 4878303 5736809 ~ 5783184 (-) True G143659

Expression Profile