RNA id: AMCG00004767


Basic Information

Item Value
RNA id AMCG00004767
length 3864
RNA type mRNA
GC content 0.57
exon number 42
gene id AMCG00004767
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 873876 ~ 945686 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGCCTTCCCCGGGAAATTACACAACCAGTGCTGGCCAGTGGCACGGGAAGGTCCTCCGCAGTGGTGAAGACCAGCCTGAGGAGAGAGGTTCCTCCCCGCAAGCTTCAGCAGAGGTGCTCAACAGCACAACAGTGCAAACCAAGTCGAAACTTCTGTCTCATGCGAGAGAACTAGAGGATTCAACCTGGGAAGAGGAAGTTTCAAGAGATGCTGAGATTGAAGAACCAGAGGTGGCTATTGCAAATCTTGCAGAGATGACAGTCACCACAGAGGAGCCAGAGCTGGAAGGAGGTAGGGAACACATCAGACCCAAAGAGAGAGCTGAGACCAACTCAAGGGGACCAGTAACCCCTTTGGAATCCTTAAAAGGATCAAGCAAGCAAACAGGACAGGTCATGGATCTCAGACCTGGGCAAAAGCGCCTTTTACCTCAGAACTGGACAACAGAAAGGCCTGCCTCAAGGAGAACGGATGACCAAATAGTGTCAGGTCCAATCACGGTACCTATTAAAGAGAGCAGGCAAAATGATAGCAGCCTGCCCCCTGAACCATCAGGAGACACAGAGCTGAACGTGCGTGTCGGTGTAGCAGGTTCAGAAACGAGAACCACCACAGGGGCGGAGCTGTTGCTTCCCGTCCATTTGACTGGGCAATATGAGCTAGAAGTGCTGCTTGAGAAAATAAACTCTACACTGCCACAGGACACGAGCCCACAGAATATGTCAAAGGCAGCGAGGGGACCTGAAGCATCGAGCCCTCCGCCATCCTTTACCTCAAATGTATCTTCCGCAAAAGCAAACGAAACCAGGAACCAGGGGCCCACAGTACAAACTGGAGCTCAGCAGCCAACTATAATGCCCAAAATGTCAGTAACACCCACAGAAGAGATGGatacagaggaggaggaggacaaggaggatgaggaggaggatgaggacaagGACGCAGAGGACAGGGCAGCACCCACCAAGTCAGTTGCGGTAGTTGAGGAAGCCGTTGAAAAGGCCACAGATCATGTCATTTCAGCTGACTTCTTCACCTCACCGCCCAGACCTACCCTGGAGGGCAGGAGACCAAGCCATAGCACTGGTCCCCAAGGGCCGCAAGGCTACACAGGGCCGAAGCGGCGAATGGGCCAGCCTGGAGAGCAGGACCCGATCAGACCCCTTGAGATGCCCAGCactttgcttttcaaaacatttgaggAAGACTGGCAAGCATTCAAGAGACAGAAGGGCCCCCCAGGCTTCTATGGACGCAAAGGGGATCCTGGGCCCCCAGGTCTCCAGGGCTTCAGTGGAGAAAAGGGATTCAAAGGGGAGCTGGGTGAGTGGggaTACCAGGGTGAACCTGGACATCAGGGGAAAAAAGGCAGGAAAGGGGAGAagTCAACAGATGAACCCAGGGATACACAGTATACAGCCCCAGGACAGAAGCTATGCAGGGTAATAAAGGATATAGGGGGGCAGTCGGAATCCCAGGGAATTATCGGCCCCAGCGGGATAAAGGGGGTGCCAGGTGTAAATGGACCCCCGggcAATCCCGGCAGTGAGGGCATCATGGGGCTGCCTGGAGTACGTGGGCCGCAGgGTGAGCAGGGGGACTCTGGGGAGATGGGAGAACTTGGACACTTGGGACCAAATGGCTATAAAGCACAGAAAGGGAAGAAAGGAGATCCAGGATTTAAAGGAGATCCTGGCTATGAAGGGATAATGGGAGAACCTGGCAAGTTTGGTGGAGATGGAGTGAAGGTATTCCTGGCAGCCGTGGGATGGATGGGACTCATGGCGCTCCGGGTTCTTACGGTCATCCAGGGTCTAAAGGGAATCCTGGACCCTGGGGACAAAAGGGCATCACAGGGAAGACAGGCACACCTGGGACACAAGGGCCTGTTGGGAAAAGGAGACATCGGAAGCAGAGGGGAAATTGGCCCTCGAGGAAAGACTGGCCCAAAGGGTAATATAGGACCCTGGGGAGAGATCGGCTTCCCTGGTCTTCCAGGCAACAGGGGGCAGCCAGGACCTTCAGGACCACCCGGGCTGCTGGGATACCCTgGTAAAGACGGAGAGCCAGGACCAGTAGGCCTGGAGGGGAACAAAGGAGACAAGGGTGTGCATGGGGTGCCAGGGGAGAAGGGAGTTGCTGGTCTCGATGGTGAGGAGGGACCTCCTGGATTAATGGGGCTTGAAGGCCCAGATGGGCTGAAGGGGCCACCTGGCAAAAAGGGGCATCAAGGGACGATGGGTCCAAAGGTGGCCAAAGGCATTCAGGGAGACTGGGGCCATCGAGGTCTGCTGGGACGAGGGGGTCCGCCAGGGAGAGAGGGTTACTCTGGGGTcccaggggagagagggaagcatGGACTGCCAGGGGAGAGGGTTTGTCTTAATTCCATCCATGAAGGAGTTATGAGGGAGCAGCTGGTAGGCTGGGCAGAGCTGGCCAAGTGGGTCTCAAGGGAAGCAGAGGTGATGATGGGGAGCATGGGAGGCCTGGGCTTCGTGGAAACAGAGGACCGCTGGCAGCGAAGGCTGGCACTGGAAAGAAAGGAAGTCGGGGCGTTCCCGGCAAACTGGGGCCACCAGGTCATCGAGGAAAGAGAGGCCCACCTGGACCTCCAGGGAAACAGGGCCCAAGGGCTTTGGATGGACTGCTGGGTGTTCAAGGGAACGAAGGAGATCCATAGAGTGGCAGCTGTGCGGTGTGAGAGTGCCTGTGGGGATGGGGACAGTGGTCGCACGGGGCGCCCAGGTACTCCAGGACCCCCAGGGAAGAAGGTGAGCACGCTGCCGgGAATTCCAGGCCTCAGAGGAGACAAGGGGAAGACTGGGCCTCAGCCTGCAAAGGGATTAAAAGGTGCCAAGGGGCTTCTGGGGCCAAATGGGCCGCCAGGTGTTAAAgggAATCGAGGCCTGCGCGGCTACAAGGGTCCTGTAGGCTCGAAAGGAAAGCAGGGCCTCTTTGGAAAGAAGAAAGTGGGCAGGCAGAAAGTGAACAGGCAGAGGCAGAGATCTCAGCAGGACCAGGGGGAACCAGATGTTGCACAGCTGGGGAGCCAGGCGCAGGGCACGAAGGAGGATCCGGCCACCTCCTGCTTGGAATTGAAGCTGAGTTACCCTCATTTACAAGACGGCTATTACTACATGGACCCCAATCAGGGCTGTCCCTTCGACGCCCTGTACGTCTTCTGCAACTTCACTGCGGGGGGAGTGACCTGCGTCCCTCCAGTGAGGTCACAGATCTCAGGACAGTGGGCTTCCAAAGAGAGGGACTCCAAAGCTTCAGTCCAGTGGTTTAGCCAGCTGAACAATGGCTTTAGGCTGGGCTTCGCTGGCCTCACCGTGGTCCAGCTACGGTTTCTACGCTTACACAGTAATTCCGCCTCTCAGTTCCTCACCGTGTATTGCCCGTCCACCGTTGCCAATGACGGTCTGACATCAGGTCAGGACCCTGCCCTGCACTTCCTGGGAGACAACGACAAAGAGATCAGCTACACAGACCCGGCCTACAGGGACAGAAGTCAAGAGTCAATCCAGATCAGGGTGGAGGCTCGGGGTCCCGACACAGAGCTGCTGCCAGTGAGAGACCTGGGGGTGGAGAGGATCGAGGATGAAGGGAGAGATTTCGCagccatcctgggccccctctgCTTTTTGGGCAGTGAAGGCGGTAAGAGCGCCCCTAGCGGCCGTGCGGGGCCGTGCGGGAGGCGGAGCGGCGGACAGGAAAGATCGAGCTTCTCCTCCTGCGTGCGGCTTCAGGAGACACACAGGAACCGGCGACCGGAGAGGAGCACTGCCGATACACAGAGGCTAGAGCACCGGGACCACTCGGGCAGCGCTCTGGGATTGCTTCGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179784 lncRNA downstream 80927 789102 ~ 792949 (-) True G142920
TU179766 lncRNA downstream 91536 780418 ~ 782340 (-) True G142902
TU179754 lncRNA downstream 140917 732484 ~ 732959 (-) True G142891
TU179753 lncRNA downstream 168860 704290 ~ 705016 (-) True G142890
TU179656 lncRNA downstream 522249 307116 ~ 351627 (-) True G142828
TU179825 lncRNA upstream 224327 1170013 ~ 1170516 (-) True G142953
TU179831 lncRNA upstream 343978 1289664 ~ 1289985 (-) True G142959
TU179843 lncRNA upstream 434194 1379880 ~ 1380879 (-) True G142967
TU179849 lncRNA upstream 440737 1386423 ~ 1386687 (-) True G142972
TU179873 lncRNA upstream 581892 1527578 ~ 1527810 (-) True G142990
AMCG00004766 mRNA downstream 15370 836242 ~ 858506 (-) True AMCG00004766
AMCG00004764 mRNA downstream 38721 833891 ~ 835155 (-) True AMCG00004764
AMCG00004765 mRNA downstream 74004 793029 ~ 799872 (-) True AMCG00004765
AMCG00004760 mRNA downstream 185425 677866 ~ 688451 (-) True AMCG00004760
AMCG00004762 mRNA downstream 200001 663525 ~ 673875 (-) True AMCG00004762
AMCG00004770 mRNA upstream 54850 1000536 ~ 1001328 (-) True AMCG00004770
AMCG00004769 mRNA upstream 68658 1014344 ~ 1071694 (-) True AMCG00004769
AMCG00004772 mRNA upstream 128764 1074450 ~ 1108517 (-) True AMCG00004772
AMCG00004771 mRNA upstream 196674 1142360 ~ 1150290 (-) True AMCG00004771
AMCG00004768 mRNA upstream 231655 1177341 ~ 1177622 (-) True AMCG00004768
TU179730 other downstream 227497 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 743173 127778 ~ 130703 (-) True G142773
TU179583 other downstream 751349 119695 ~ 122527 (-) True G142770
TU180047 other upstream 1763868 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 2193171 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 2193171 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 3168061 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 4791123 5736809 ~ 5783184 (-) True G143659

Expression Profile