RNA id: AMCG00004771


Basic Information

Item Value
RNA id AMCG00004771
length 396
RNA type mRNA
GC content 0.53
exon number 3
gene id AMCG00004771
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 1142360 ~ 1150290 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGCCTTTTCATGTCTGATTCGTGCTGCGGGGCTCTGGGAAGATCTGGCGCCTTGCACTGGAGGATCTGGGGGTGGGGAGAGCACCTCCAGGCAGGCAGGCATAAGGATTAGCTGGCATTGTTTGGAGAAGAAAACCTGCACTCCTTTTGAATACATGATCCTGGCCACCATCATAGCCAACTGCATTGTCCTGGCTCTGGAGCAGCACCTTCCTGGAGAAGACAAGACGCCCATGTCCAAGAGACTAGAAAAGACTGAGCCCTACTTCATTGGGATCTTTTGCTTTGAAGCCGGGATTAAAGTTGTGGCCCTGGGGTTTGTTTTCCACAAGGGCTCCTACCTGCGGAACGGCTGGAATGTGATGGACTTCATTGTGGTTCTCAGTGGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179784 lncRNA downstream 349411 789102 ~ 792949 (-) True G142920
TU179766 lncRNA downstream 360020 780418 ~ 782340 (-) True G142902
TU179754 lncRNA downstream 409401 732484 ~ 732959 (-) True G142891
TU179753 lncRNA downstream 437344 704290 ~ 705016 (-) True G142890
TU179656 lncRNA downstream 790733 307116 ~ 351627 (-) True G142828
TU179825 lncRNA upstream 19723 1170013 ~ 1170516 (-) True G142953
TU179831 lncRNA upstream 139374 1289664 ~ 1289985 (-) True G142959
TU179843 lncRNA upstream 229590 1379880 ~ 1380879 (-) True G142967
TU179849 lncRNA upstream 236133 1386423 ~ 1386687 (-) True G142972
TU179873 lncRNA upstream 377288 1527578 ~ 1527810 (-) True G142990
AMCG00004772 mRNA downstream 33843 1074450 ~ 1108517 (-) True AMCG00004772
AMCG00004769 mRNA downstream 70666 1014344 ~ 1071694 (-) True AMCG00004769
AMCG00004770 mRNA downstream 141032 1000536 ~ 1001328 (-) True AMCG00004770
AMCG00004767 mRNA downstream 196674 873876 ~ 945686 (-) True AMCG00004767
AMCG00004766 mRNA downstream 283854 836242 ~ 858506 (-) True AMCG00004766
AMCG00004768 mRNA upstream 27051 1177341 ~ 1177622 (-) True AMCG00004768
AMCG00004773 mRNA upstream 77835 1228125 ~ 1228583 (-) True AMCG00004773
AMCG00004779 mRNA upstream 369227 1519517 ~ 1520486 (-) True AMCG00004779
AMCG00004778 mRNA upstream 411495 1561785 ~ 1606266 (-) True AMCG00004778
AMCG00004777 mRNA upstream 540738 1691028 ~ 1718262 (-) True AMCG00004777
TU179730 other downstream 495981 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 1011657 127778 ~ 130703 (-) True G142773
TU179583 other downstream 1019833 119695 ~ 122527 (-) True G142770
TU180047 other upstream 1559264 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 1988567 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 1988567 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 2963457 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 4586519 5736809 ~ 5783184 (-) True G143659

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030394 True 5349 mRNA 0.49 40 NC_007113.7 1002104 ~ 1117641 (+)
grasscarp (Ctenopharyngodon idella) CI01000010_05734012_05743267.mRNA True 912 mRNA 0.41 3 CI01000010 5733797 ~ 5743499 (-)