RNA id: AMCG00004775


Basic Information

Item Value
RNA id AMCG00004775
length 1578
RNA type mRNA
GC content 0.54
exon number 11
gene id AMCG00004775
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 1435263 ~ 1457250 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAGCTGATACTGTAGCTGCTGACATGAATCTGGGAACGGTCCTGTCCTCTACCACTCCGGCTCCAGAAACAAAAGGGGAACTTGCCTTGGAGACCCCAGATATTGTGGTCGTTGTCATATACTTTGTCTTAGTCATCACAGTGGGGATATGGTCTTCATTCAGGGCCAACCGCGGGACAATCGGAGGATATTTCCTGGCTGGGAGGTCGATGACATGGTGGCCTGTGAGAGGCTTGTCAGCAGTTATCTACACAGATGCCTTGCAGACTGTCATCATGGTAGTGGGAGCATTTGTCCTGATGTTTATAGGTTTTGATAGAGTGGGCTGGTATGAGGGTCTCCTGGAGAAGTACAAGGGAGCAGTGCCTGCCCTCACGGTGCCCAACACCTCCTGCCACCTTCCCCGCAGTGACGCCTTCCACATGTTTCGAGACCCAGTGACAGGAGACCTGCCCTGGCCAGGCCTGATCTTTGGACTCACCATATTGGCAACATGGTGCTGGTGCACCGACCAGGTGATCGTTCAGAGGTCTCTCTCTGCCAAGAACCTGTCCCATGCCAAGGGGGGCTCAGTGCTGGGAGGCTACCTGAAAGTTCTGCCCATGTTCTTCATCGTCATGCCTGGAATGATCAGCAGGGCACTCTTCCCAGCGTGCAAGAGAATTTGTGGGGTTGAGGTGGGCTGCTCAAACATAGCCTACCCCAAACTGGTTGTGGAACTCATGCCAGTAGGTCTGCGGGGGCTAATGATCGCAGTGATGATGGCTGCCCTCATGTCCTCCCTCACTTCCATcttcaacagcagcagcacactcTTCACCATGGACATCTGGCAGAGGGTCCGTCGGCAAGCCTCTGAGCATGAACTCATGGTCGTGGGCAGgGTGTTCATTGTGGTGCTGGTGGCTGTCAGTATCTTGTGGATTCCCATCATCCAGACATCCAACAGTGGGCAGCTGTTCGACTATATCCAGTCCATCACCAGCTACTTGGCGCCGCCCATCACAGCCCTCTTCATCATGGCAGTGTTCTGGAAGCGTGTCAATGAGCCAGGAGCCTTTTGGGGCCTAATGGTGGGCCTTGTCATCGGCTTCATCAGGATGATCCTGGAGTTCATGTACACAGCACCCTCCTGTGGCAAGGAGGACACTCGGCCTTTCCTCTTGAAGGATGTCCACTACCTGTACTTTGCCCTGATCTTGCTCGCTATCACTGCTCTAGTCATTGGCATAGTGAGTCTGTGCACTCCTGCCATCCACAACCAGCATCTTGTTCGACTGACCTGGTGGACAAGACACAGCCAAGAGCCCCGTGTTGACCTTGGTGACCTTTGGGCAGAGCCTGCTGTGCCTGACCCCACAAAGACCCCCTCAGAAGTGGAGTGTCCTTCACCAGCAGGGCTGTGGTTTTGTGGCCTCTCTGGTGATGTCCGCCCTCAGCTCAGCCTTGAGGAGAGTCAGGCTTTGGAGAAGAAGTTGACCAGTATCACTGAGGAGCCAGTGTGGAGGAACGTGTGTAATATCAATGCCATCATCCTGCTGACTATCAATGTCTTCTTGTGGGGCTTCTTTGCCTGA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179850 lncRNA upstream 23056 1411957 ~ 1412207 (+) True G142973
TU179830 lncRNA upstream 145278 1289709 ~ 1289985 (+) True G142958
TU179774 lncRNA upstream 642320 789038 ~ 792943 (+) True G142910
TU179740 lncRNA upstream 733505 667957 ~ 701758 (+) True G142881
TU179699 lncRNA upstream 865120 566383 ~ 570143 (+) True G142847
TU179912 lncRNA downstream 802479 2259729 ~ 2308874 (+) True G143029
TU179964 lncRNA downstream 1102067 2559317 ~ 2562389 (+) True G143074
TU179965 lncRNA downstream 1102067 2559317 ~ 2562389 (+) False G143074
TU180000 lncRNA downstream 1224054 2681304 ~ 2681548 (+) True G143107
TU180005 lncRNA downstream 1263048 2720298 ~ 2761630 (+) True G143109
AMCG00004776 mRNA upstream 3453 1429518 ~ 1431810 (+) True AMCG00004776
AMCG00004774 mRNA upstream 28016 1406999 ~ 1407247 (+) True AMCG00004774
AMCG00004758 mRNA upstream 775474 650702 ~ 659789 (+) True AMCG00004758
AMCG00004757 mRNA upstream 877982 539775 ~ 557281 (+) True AMCG00004757
AMCG00004759 mRNA upstream 927437 479846 ~ 507826 (+) True AMCG00004759
AMCG00004782 mRNA downstream 1033204 2490454 ~ 2490690 (+) True AMCG00004782
AMCG00004783 mRNA downstream 1091357 2548607 ~ 2558673 (+) True AMCG00004783
AMCG00004784 mRNA downstream 1495061 2952311 ~ 2952624 (+) True AMCG00004784
AMCG00004786 mRNA downstream 1540756 2998006 ~ 3002925 (+) True AMCG00004786
AMCG00004788 mRNA downstream 1666017 3123267 ~ 3160209 (+) False AMCG00004788
TU179968 other downstream 983291 2440541 ~ 2520689 (+) False G143075
TU179967 other downstream 1091337 2548587 ~ 2559080 (+) True G143075
TU180082 other downstream 1665831 3123081 ~ 3124482 (+) True AMCG00004788
TU180081 other downstream 1665973 3123223 ~ 3124482 (+) False AMCG00004788
TU180140 other downstream 1920565 3377815 ~ 3395158 (+) True AMCG00004793

Expression Profile