RNA id: AMCG00004776


Basic Information

Item Value
RNA id AMCG00004776
length 312
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00004776
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 1429518 ~ 1431810 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTTTACACAGAACGTTTAATGCGCCAACATTCCTGAGGTCTTTGCCTGCTGCCTGCGCTTTCCACTCCACTCCTGTTGTACAAAATGCCAACCGAGTGTCTATCGTGCGCTGTGCCAGGCAGACCTATACTTGTAATTACCCCGTCCTGCTGGTGAGACCTGATGGCTCCACTATCCACATCCGGTATAAGGAACCCAGGAGGATACTGATGAAAAGGGACCCCAGGAAGACAGCATCCAGAACAGATCAGGATGAGTTTGAAGACGACTTCAAAACAGATGATTACAGCCAGTTCTGGAAGAAGTAA

Function

GO: NA

KEGG:

id description
K17436 MRPL55; large subunit ribosomal protein L55

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179850 lncRNA upstream 17311 1411957 ~ 1412207 (+) True G142973
TU179830 lncRNA upstream 139533 1289709 ~ 1289985 (+) True G142958
TU179774 lncRNA upstream 636575 789038 ~ 792943 (+) True G142910
TU179740 lncRNA upstream 727760 667957 ~ 701758 (+) True G142881
TU179699 lncRNA upstream 859375 566383 ~ 570143 (+) True G142847
TU179912 lncRNA downstream 827919 2259729 ~ 2308874 (+) True G143029
TU179964 lncRNA downstream 1127507 2559317 ~ 2562389 (+) True G143074
TU179965 lncRNA downstream 1127507 2559317 ~ 2562389 (+) False G143074
TU180000 lncRNA downstream 1249494 2681304 ~ 2681548 (+) True G143107
TU180005 lncRNA downstream 1288488 2720298 ~ 2761630 (+) True G143109
AMCG00004774 mRNA upstream 22271 1406999 ~ 1407247 (+) True AMCG00004774
AMCG00004758 mRNA upstream 769729 650702 ~ 659789 (+) True AMCG00004758
AMCG00004757 mRNA upstream 872237 539775 ~ 557281 (+) True AMCG00004757
AMCG00004759 mRNA upstream 921692 479846 ~ 507826 (+) True AMCG00004759
AMCG00004746 mRNA upstream 1291265 134381 ~ 138253 (+) True AMCG00004746
AMCG00004775 mRNA downstream 3453 1435263 ~ 1457250 (+) True AMCG00004775
AMCG00004782 mRNA downstream 1058644 2490454 ~ 2490690 (+) True AMCG00004782
AMCG00004783 mRNA downstream 1116797 2548607 ~ 2558673 (+) True AMCG00004783
AMCG00004784 mRNA downstream 1520501 2952311 ~ 2952624 (+) True AMCG00004784
AMCG00004786 mRNA downstream 1566196 2998006 ~ 3002925 (+) True AMCG00004786
TU179968 other downstream 1008731 2440541 ~ 2520689 (+) False G143075
TU179967 other downstream 1116777 2548587 ~ 2559080 (+) True G143075
TU180082 other downstream 1691271 3123081 ~ 3124482 (+) True AMCG00004788
TU180081 other downstream 1691413 3123223 ~ 3124482 (+) False AMCG00004788
TU180140 other downstream 1946005 3377815 ~ 3395158 (+) True AMCG00004793

Expression Profile