RNA id: AMCG00004779


Basic Information

Item Value
RNA id AMCG00004779
length 276
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00004779
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 1519517 ~ 1520486 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aTAACGTGCCCCGGGGTGGTGCTTTTAAACCAGGAAGATGTAtacctctgtgtttgtgtcatgGGGAAATACCAGAAGACCAAGTGTGTACCTCCCGTGTTCCCTTTACTTTTCCACGAAAAGATGTCTTTTGAAAAGCTTGTTCCACCAGCGGGTGAAACTTTAGCAACTGTAGTAGAACACACAAGAGAGTTCCTGTATCCTGGCCCCAGACTGACCCCCAAGTACCCAGGCTATGAGCGTGAGCTCCTTATGAAGAGATCCCACACATTTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179849 lncRNA downstream 132830 1386423 ~ 1386687 (-) True G142972
TU179843 lncRNA downstream 138638 1379880 ~ 1380879 (-) True G142967
TU179831 lncRNA downstream 229532 1289664 ~ 1289985 (-) True G142959
TU179825 lncRNA downstream 349001 1170013 ~ 1170516 (-) True G142953
TU179784 lncRNA downstream 726568 789102 ~ 792949 (-) True G142920
TU179873 lncRNA upstream 7092 1527578 ~ 1527810 (-) True G142990
TU179935 lncRNA upstream 374602 1895088 ~ 1924283 (-) True G143046
TU179952 lncRNA upstream 769093 2289579 ~ 2290140 (-) True G143062
TU179988 lncRNA upstream 1036368 2556854 ~ 2561991 (-) True G143095
TU179998 lncRNA upstream 1120092 2640578 ~ 2640860 (-) True G143105
AMCG00004773 mRNA downstream 290934 1228125 ~ 1228583 (-) True AMCG00004773
AMCG00004768 mRNA downstream 341895 1177341 ~ 1177622 (-) True AMCG00004768
AMCG00004771 mRNA downstream 369227 1142360 ~ 1150290 (-) True AMCG00004771
AMCG00004772 mRNA downstream 411000 1074450 ~ 1108517 (-) True AMCG00004772
AMCG00004769 mRNA downstream 447823 1014344 ~ 1071694 (-) True AMCG00004769
AMCG00004778 mRNA upstream 41299 1561785 ~ 1606266 (-) True AMCG00004778
AMCG00004777 mRNA upstream 170542 1691028 ~ 1718262 (-) True AMCG00004777
AMCG00004780 mRNA upstream 375794 1896280 ~ 1912141 (-) True AMCG00004780
AMCG00004781 mRNA upstream 680725 2201211 ~ 2204495 (-) True AMCG00004781
AMCG00004785 mRNA upstream 1168760 2689246 ~ 2691272 (-) True AMCG00004785
TU179730 other downstream 873138 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 1388814 127778 ~ 130703 (-) True G142773
TU179583 other downstream 1396990 119695 ~ 122527 (-) True G142770
TU180047 other upstream 1189068 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 1618371 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 1618371 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 2593261 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 4216323 5736809 ~ 5783184 (-) True G143659

Expression Profile