RNA id: AMCG00004781



Basic Information


Item Value
RNA id AMCG00004781
length 258
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00004781
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 2201211 ~ 2204495 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTATGAACACGTAGCTGAGAGTGAAGGTAACCTGGGTCGTGTGGATTACATCAGTGAGTTTGAGTTTGACCTCTTCATCCGGCCAGACACCTGTAACCCTCGCTTCAGGGTTTGGTTCAACTTCACGGTGGAGAATGTCCGGGAGAGCCAGCCTCTCACGGCCCTTGTTAGAGCTAAAAAAAGCCGGGATGAAAGTGTGGGACGCTGTTTCCTGCAGCCTGACTCTATATCGGCCCATCTCCCTGCAGTGCTGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU179935 lncRNA downstream 276928 1895088 ~ 1924283 (-) True G143046
TU179873 lncRNA downstream 673401 1527578 ~ 1527810 (-) True G142990
TU179849 lncRNA downstream 814524 1386423 ~ 1386687 (-) True G142972
TU179843 lncRNA downstream 820332 1379880 ~ 1380879 (-) True G142967
TU179831 lncRNA downstream 911226 1289664 ~ 1289985 (-) True G142959
TU179952 lncRNA upstream 85084 2289579 ~ 2290140 (-) True G143062
TU179988 lncRNA upstream 352359 2556854 ~ 2561991 (-) True G143095
TU179998 lncRNA upstream 436083 2640578 ~ 2640860 (-) True G143105
TU180044 lncRNA upstream 476825 2681320 ~ 2681561 (-) True G143142
TU180046 lncRNA upstream 486861 2691356 ~ 2691959 (-) True G143144
AMCG00004780 mRNA downstream 289070 1896280 ~ 1912141 (-) True AMCG00004780
AMCG00004777 mRNA downstream 482949 1691028 ~ 1718262 (-) True AMCG00004777
AMCG00004778 mRNA downstream 594945 1561785 ~ 1606266 (-) True AMCG00004778
AMCG00004779 mRNA downstream 680725 1519517 ~ 1520486 (-) True AMCG00004779
AMCG00004773 mRNA downstream 972628 1228125 ~ 1228583 (-) True AMCG00004773
AMCG00004785 mRNA upstream 484751 2689246 ~ 2691272 (-) True AMCG00004785
AMCG00004787 mRNA upstream 489530 2694025 ~ 2993047 (-) True AMCG00004787
AMCG00004789 mRNA upstream 832687 3037182 ~ 3047714 (-) True AMCG00004789
AMCG00004790 mRNA upstream 915734 3120229 ~ 3217229 (-) True AMCG00004790
AMCG00004794 mRNA upstream 1201354 3405849 ~ 3416284 (-) True AMCG00004794
TU179730 other downstream 1554832 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 2070508 127778 ~ 130703 (-) True G142773
TU179583 other downstream 2078684 119695 ~ 122527 (-) True G142770
TU180047 other upstream 505059 2709554 ~ 2710004 (-) True G143145
TU180095 other upstream 934362 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 934362 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 1909252 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 3532314 5736809 ~ 5783184 (-) True G143659

Expression Profile