RNA id: AMCG00004783


Basic Information

Item Value
RNA id AMCG00004783
length 588
RNA type mRNA
GC content 0.55
exon number 3
gene id AMCG00004783
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 2548607 ~ 2558673 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTCGCGAGGCGTGGGGTTCATCCGCTTTGATAAGAGGATAGAAGCAGAAGAAGCCATCAAGGGACTGAATGGCCAGAAACCCTCGGGTACCGCTGAACCCATCACTGTCAAGTTCGCCAACAACCCCAGCCAGAAGACCAGCCAGGCCCTGCTCTCTCAACTCTACCAGTCACCAAACCGGCGGTACCCTGGGCCTCTGCATCACCAAGCCCAGAGGTTCAGGCTGGACAATTTGCTTAATATGGCCTATGGCGTAAAGAGGTTCTCCCCCATCACCATAGACAGCATGACCAGCCTAGTGGGCATGAACATCCCTGGACACACAGGAACGGGCTGGTGCATTTTTGTGTACAACCTGTCTCCTGACTCGGATGAGAGCGTGCTCTGGCAGCTGTTTGGGCCCTTTGGAGCGGTCAACAACGTCAAAGTGATCCGTGACTTCAACACCAACAAATGTAAAGGCTTCGGTTTTGTTACCATGACGAACTACGACGAGGCGGCCATGGCCATCGCCAGTCTGAACGGCTACCGGCTGGGCGACCGTGTGCTGCAGGTGTCTTTCAAAACCAACAAGACCCACAAGTCC

Function

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179912 lncRNA upstream 239733 2259729 ~ 2308874 (+) True G143029
TU179850 lncRNA upstream 1136400 1411957 ~ 1412207 (+) True G142973
TU179830 lncRNA upstream 1258622 1289709 ~ 1289985 (+) True G142958
TU179774 lncRNA upstream 1755664 789038 ~ 792943 (+) True G142910
TU179740 lncRNA upstream 1846849 667957 ~ 701758 (+) True G142881
TU179964 lncRNA downstream 644 2559317 ~ 2562389 (+) True G143074
TU179965 lncRNA downstream 644 2559317 ~ 2562389 (+) False G143074
TU180000 lncRNA downstream 122631 2681304 ~ 2681548 (+) True G143107
TU180005 lncRNA downstream 161625 2720298 ~ 2761630 (+) True G143109
TU180072 lncRNA downstream 525699 3084372 ~ 3086394 (+) True G143166
AMCG00004782 mRNA upstream 57917 2490454 ~ 2490690 (+) True AMCG00004782
AMCG00004775 mRNA upstream 1091357 1435263 ~ 1457250 (+) True AMCG00004775
AMCG00004776 mRNA upstream 1116797 1429518 ~ 1431810 (+) True AMCG00004776
AMCG00004774 mRNA upstream 1141360 1406999 ~ 1407247 (+) True AMCG00004774
AMCG00004758 mRNA upstream 1888818 650702 ~ 659789 (+) True AMCG00004758
AMCG00004784 mRNA downstream 393638 2952311 ~ 2952624 (+) True AMCG00004784
AMCG00004786 mRNA downstream 439333 2998006 ~ 3002925 (+) True AMCG00004786
AMCG00004788 mRNA downstream 564594 3123267 ~ 3160209 (+) False AMCG00004788
AMCG00004791 mRNA downstream 693297 3251970 ~ 3262480 (+) True AMCG00004791
AMCG00004792 mRNA downstream 743830 3302503 ~ 3307925 (+) True AMCG00004792
TU179968 other upstream 27918 2440541 ~ 2520689 (+) False G143075
TU180082 other downstream 564408 3123081 ~ 3124482 (+) True AMCG00004788
TU180081 other downstream 564550 3123223 ~ 3124482 (+) False AMCG00004788
TU180140 other downstream 819142 3377815 ~ 3395158 (+) True AMCG00004793
TU180311 other downstream 1390753 3949426 ~ 3949837 (+) True G143366
TU180351 other downstream 1550349 4109022 ~ 4109655 (+) True G143404

Expression Profile