RNA id: AMCG00004784



Basic Information


Item Value
RNA id AMCG00004784
length 275
RNA type mRNA
GC content 0.43
exon number 2
gene id AMCG00004784
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 2952311 ~ 2952624 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AGATAGAGAAAATCCTCTGCTCAGCCAGAGAGAAACGTGAGCTTTACTACAATGGCAGAAGGGTGTTTCTCTTTCCAGATTTCAGCATGGAACTGCAAAGTAAGCGTAAAGACTTTGACCATCAAAACTTAGGGTGGAGTACAAAGGCACAAAGAGGTTTTTCCTCTCACCTCATGAGGCTGAAAACTTCCTTTAGGAAATGGCAGAGAACTGACAATATACTAGGAGAACCGAAGACCATCTTCCTGCTGTTTGCTTTCTGTAGCAGAATCCAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU180005 lncRNA upstream 190681 2720298 ~ 2761630 (+) True G143109
TU180000 lncRNA upstream 270763 2681304 ~ 2681548 (+) True G143107
TU179964 lncRNA upstream 389922 2559317 ~ 2562389 (+) True G143074
TU179965 lncRNA upstream 389922 2559317 ~ 2562389 (+) False G143074
TU179912 lncRNA upstream 643437 2259729 ~ 2308874 (+) True G143029
TU180072 lncRNA downstream 131748 3084372 ~ 3086394 (+) True G143166
TU180076 lncRNA downstream 146498 3099122 ~ 3099384 (+) True G143170
TU180105 lncRNA downstream 282029 3234653 ~ 3236347 (+) True G143192
TU180109 lncRNA downstream 358283 3310907 ~ 3376024 (+) True G143195
TU180138 lncRNA downstream 424445 3377069 ~ 3377271 (+) True G143218
AMCG00004783 mRNA upstream 393638 2548607 ~ 2558673 (+) True AMCG00004783
AMCG00004782 mRNA upstream 461621 2490454 ~ 2490690 (+) True AMCG00004782
AMCG00004775 mRNA upstream 1495061 1435263 ~ 1457250 (+) True AMCG00004775
AMCG00004776 mRNA upstream 1520501 1429518 ~ 1431810 (+) True AMCG00004776
AMCG00004774 mRNA upstream 1545064 1406999 ~ 1407247 (+) True AMCG00004774
AMCG00004786 mRNA downstream 45382 2998006 ~ 3002925 (+) True AMCG00004786
AMCG00004788 mRNA downstream 170643 3123267 ~ 3160209 (+) False AMCG00004788
AMCG00004791 mRNA downstream 299346 3251970 ~ 3262480 (+) True AMCG00004791
AMCG00004792 mRNA downstream 349879 3302503 ~ 3307925 (+) True AMCG00004792
AMCG00004793 mRNA downstream 426106 3378730 ~ 3390366 (+) False AMCG00004793
TU179967 other upstream 393231 2548587 ~ 2559080 (+) True G143075
TU179968 other upstream 431622 2440541 ~ 2520689 (+) False G143075
TU180082 other downstream 170457 3123081 ~ 3124482 (+) True AMCG00004788
TU180081 other downstream 170599 3123223 ~ 3124482 (+) False AMCG00004788
TU180140 other downstream 425191 3377815 ~ 3395158 (+) True AMCG00004793
TU180311 other downstream 996802 3949426 ~ 3949837 (+) True G143366
TU180351 other downstream 1156398 4109022 ~ 4109655 (+) True G143404

Expression Profile