RNA id: AMCG00004789


Basic Information

Item Value
RNA id AMCG00004789
length 3901
RNA type mRNA
GC content 0.38
exon number 2
gene id AMCG00004789
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3037182 ~ 3047714 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAGACTCACatgttgctctctctccctgtttaGGAGCTGGAGCAGATGCCAGTCTACCACCCCACTCCAAGCCAGACCCGCTTGGCTACCCAGTTGACAGAAGAGGAGCAGGTCAGGATCGCTCAGAGGATCGGGCTCATCCAACACCTGCCCAAGGGGGTGTACGATGCCGGCAGGGACGGCTCTGAAAAGAAGATTCGCGAGTGTGTGATCTGTATGATGGACTTTATATATGGGGACCCCATCCGGTTCCTGCCCTGCATGCACATCTACCACATGGATTGTATAGATGACTGGCTCATGCGCTCCTTCACCTGCCCATCCTGCATGGAGCCCGTGGACGCCGCCCTGCTGTCTTCCTATGAGACCAACTGACCCTGTTCCCTGACGCTACACCTCCCCTCACTTCTGCCCTGAATTCCACCCCCATTACCCTGCCCCACCCTGCCCTCTGTCCTCTTTCATTTATACCAGGACAGGAGGGTGGGTCTGTATGTATGTCAAGGGAAAAAGGGGCTGGACCGACAGCAgtcacaccccccaccccacccgcCAGTATCCACCTTGGACCTCTCTCCCAGGCCTGCTGGCCAGGGAAGCCTGTGGGGAGGAGCATAGTGACTGGCACTATTATGTCAAAATCTCAGAAACGACATCCAAGAACAAGCtccatgagaaaataaaaaaggactgCTGTGTGTTGCAGAAAACAAGATGATAATTAAACAAGAGCTCTGTAAATGGGATTAGTATTAGCTGATACCTTGACCCCACTGCTCCCACCCCCTAACCCCCCTTCCTTATGCTATTTCTCTGCACTGTATCTACCGGGCAATATGATTGATCCACCACTGCTAGAGAAGGCCTGTTTCTTGCTGTTCAACTCACTGGAAGTTAAGTCATATCTTTTGAGTTAGAATAGGTTCAGTCTCTAAAAGGGCTTGCTTattcccattaaaataaaataaaaaattaaagtgatgaattatacaaaataaaaaagtaaatatattttttagccCCATTGAAGTTTGGTCAGATAACATTAATCATTCTTCATCTTTCAGCCTTTATCTCACAGATCTTTCTCTGGATTGTCTGGCTGATGTCTTAAAGTTAGCTAATTTGCACATTGTTCTGCAGAAAAGGTAATGTATGGAAGTTTGCACACCCTGTACAAATAATGAGTGCTTCAATTTTGTAGCAAATAATCTCTTACACCgttgcaaaaacaaaagaaaacctgaaaaatgtttttactccATGGTCTCCCTTCTCTTATGGTTTCCCTTGGTTAATAAATCTGATCTAGTATCTATTTTTGTAAAgagaaattacatattaaaatcagCTTTGATTTATAGATTGCCCCCCTATGATCACTACAGCAATTATTTTAACTGCtttacatgcattattttttaataaataaacaggccATGTTGATTGGGCATAGATACCATAGTCAGTCCAGCATCCTCACACTGTTCTGCTTTGAATACTCCAGGATTGATTTAGATGGTCTTCATGAAAAACAGAACCCTGATAATGAATTATGTATGTACTATTTATTAACaagttgaatgtttgttttttattattcatgttgttattatttgaaattGCCAGTTTGTAAATTTGTGGACCTGCAAATTCTTAAACTTACTTTACTGTAACAATGCTGAACATGACAGGACTTTCAGTAGACATGCACTCTTTAAAAGGTGCCAACTTCGTAAGGGTCTGATAAATTAGAGGGTCTCGGTTTGATATAACCATTCAGGCCCATCCCATCCAACCCCAGCAGTGCTCAAGCAGATGGACACCAGTTTGTGGTGAATACTCTAACCTATGTCATATAACAGACTCAAGCTAGCACTGTCTGGACTGTAAGGCTCAACCAGCACTATAAAGCAGAAACTCTTTCTCAGAGTTCTGCTGTTTATGCTctctgtactttatttatttactttataggATTTAGTTTAAAGctgaaagtttattttgtttaagttaaaaGTTCTTGCTTTTCATTGGGGTATTTTCATTCTGCATTCCTTTTGGTAATGCACTTTTtcagaatttagttttttgtaattCAGAATATTAGTCTGTTTTGCAATTCTTTAGACTGCTCACAGATTTGACTGGGCTCCAGTATCTATATTCTTGCCTGTAGAACcattcatttttcaacattCAAAATTAGGACAAACTTACATTGATAATTAAAGAACtgaacaattaaattaagtaatgatTGGTTTGAAATATATCATATACATCTAATAATACTCTAATTTGAccattactttaaaatgcatacatttttagttaaattaatagtttttgGTCTCATTAGGTGTGCAAACAATATTCAGTATTTGTGTATCTGCTTGTTGGTGGACGGAGAGGAGTGAGTATAAATAGTAATCTTTCTTTCTGATTATATTTTGCAGaccacacattattattaaacacacattagACAAAATTATATGCCTTGCATTATCAACCTACTTGgtctttattatatattagcAATGCTGTGGTTAGAACAGCAGAATGGAGTTGGAAATTGTTACCAATACAAATTGTACATCAAGAAAGTTGTCCTTAAAGAAATTTGGAACTTTCTTTAAAAGGATCCAGAccagatttttaaattaatgaataaatataagaCACATATGGATCATATCAAGTAATATTGACAAAGCTAATGAAAATAACTTTCAATACCTCATTCAATACTCCATACTCCAAAAGTCCATATCCATGTCTTCATTTTccaatggaaaaataactttCCTCCGGGAAGAATAAAAGTGTGGAGTTTAATTCCTCATTCAATTATTGAAAGGTTGTGGAGAAACCAGATTAAATGCAAGAGATTTagaatgttttttaaacataattccTTTTATCTCAAAATACCTCCTGTCCAGTATTTCTTGTTTGTGGAATACGAGATTACCTTCCAAAGTCAGCTGCTTAAgtttttacattcaaataaatgaaagcacaagaaagttattatatatgtataattctATTCTTAAGtagcattataattattttgaactttTTACACTGAAGCATCTTTTGATCTTTGTGACCATCACAACTGCCCCACTCCCCCTTCAAGGCTACATAGCTCCTACAAccattctgtttctgtgtgctCTCTCCAcaacacacaatttaattttaaatggttttgaaagAAAGGTAACTTAACTGTCTCTCTGTAGAAACATTATGTGGGGTCAAGGTTCACAACAGTTACATTTCTTCAGAAACGGGGGACAAGGTGTTGTGAGCTGAACTTCCGTAACAGTGGCACAGAAGGAAAGTAGACTTTAAAAAGcttatgttttgcacatttgttCCCTATCCATTCAAAATGGAATCCATTGCCTTAGGTCTTTTTGAGACTGCAGCTTTGTAAAGGGTCCTGAACAGGCATGGGGCTCAGTCTAGCTACAGGGGATCAGAGGAGCCTGGTGGGAATCTGAGATGAACACAAATGAAACCAATTTTGGAATCATATGGATACCCAAAGAGGGACACCCAGTGTGAAAACTGGAAAGGAATTAAGATTCTTGGAAGATAATCCCCCAGCAGCACTGAATACAGGAATACAATGCAAAACTCTAccagatgtatgtatgtatgtattagtgtgtgtatttgtgcacATCCAAATACACACCGACTGTTCAGAAATAAATTGTACACTGTAACTGTGGATTCCATTTCTCTTGGGGTGTATTTATTGAAGAACAGTCAACATCTAAATGTATGTGTGCTTGTAAGAATATCTGTATGTATTGTCTGtaagtgtgtatatacatacatacacagactaatcataaataaatagaaactaTGCTGTGG

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11980 RNF11; E3 ubiquitin-protein ligase RNF11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180063 lncRNA downstream 32509 3004422 ~ 3004673 (-) True G143158
TU180052 lncRNA downstream 123627 2874367 ~ 2913555 (-) True G143149
TU180038 lncRNA downstream 300483 2731408 ~ 2736699 (-) True G143140
TU180046 lncRNA downstream 345223 2691356 ~ 2691959 (-) True G143144
TU180044 lncRNA downstream 355621 2681320 ~ 2681561 (-) True G143142
TU180085 lncRNA upstream 50788 3098502 ~ 3098715 (-) True G143177
TU180088 lncRNA upstream 57581 3105295 ~ 3107829 (-) True G143180
TU180102 lncRNA upstream 176513 3224227 ~ 3224490 (-) True G143189
TU180122 lncRNA upstream 208097 3255811 ~ 3257926 (-) True G143206
TU180119 lncRNA upstream 325319 3373033 ~ 3375723 (-) True G143204
AMCG00004787 mRNA downstream 44135 2694025 ~ 2993047 (-) True AMCG00004787
AMCG00004785 mRNA downstream 345910 2689246 ~ 2691272 (-) True AMCG00004785
AMCG00004781 mRNA downstream 832687 2201211 ~ 2204495 (-) True AMCG00004781
AMCG00004780 mRNA downstream 1125041 1896280 ~ 1912141 (-) True AMCG00004780
AMCG00004777 mRNA downstream 1318920 1691028 ~ 1718262 (-) True AMCG00004777
AMCG00004790 mRNA upstream 72515 3120229 ~ 3217229 (-) True AMCG00004790
AMCG00004794 mRNA upstream 358135 3405849 ~ 3416284 (-) True AMCG00004794
AMCG00004799 mRNA upstream 565197 3612911 ~ 3632903 (-) True AMCG00004799
AMCG00004800 mRNA upstream 593776 3641490 ~ 3648200 (-) True AMCG00004800
AMCG00004802 mRNA upstream 601046 3648760 ~ 3654005 (-) True AMCG00004802
TU180047 other downstream 327178 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 2390803 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 2906479 127778 ~ 130703 (-) True G142773
TU179583 other downstream 2914655 119695 ~ 122527 (-) True G142770
TU180095 other upstream 91143 3138857 ~ 3160673 (-) False AMCG00004790
TU180096 other upstream 91143 3138857 ~ 3200167 (-) False AMCG00004790
TU180357 other upstream 1066033 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 2689095 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 5306275 8353989 ~ 8377001 (-) True G144050

Expression Profile