RNA id: AMCG00004791


Basic Information

Item Value
RNA id AMCG00004791
length 2384
RNA type mRNA
GC content 0.43
exon number 9
gene id AMCG00004791
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3251970 ~ 3262480 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGCGGAGAGCAGGCTCACAGGAGGGGGAGTCACAGAGGGGACAGGCGGAGAAAAttggaaatataattatttacaaaacaaattgatatCGTGTATAGTGTAGTTACAATCAAACGGCATTTCCCCAATATGAAATTCTTGGTGTTGGCGGCCTTAATGGCTGCATCTTGCGCTGAGCCTGTCGTTTATTTTCGGGAGCAATTTGATGATGAGGATGCCTGGAAGAGCCGCTGGGTGGAATCCAGACACAAGTCGGACTACGGCAAGTTCGTCCTGACAGCCGGGAAATTCTACGGTGATGCCGAGAAAGACAAAGgtctgcagaccagtcaggatgCCAAGTTCTACTCTCTGTCATCACGGTTTGAATCGTTCAGCAATGAGGGGCAGACATTGGTGCTTCAGTTCACAGTAAAACATGAGCAAAGCATCGACTGTGGAGGTGGTTACATCAAAGTGTTCCCAGCAGATCTCAACCAGGAGGATATGCATGGGGACTCCAACTATAACCTAATGTTTGGTCCTGATATCTGTGGTCCTGGCACCAAAAAAGTTCATGTTATCTTTAATTACAAAGGAAAGAACCACTTAATCAACAAAGACATTCGATGCAAGGATGATGAATACAGTCACTTGTACACACTGATTGTCCGCCCTGACAACACATATGAAGTGAAGATTGACAATAAGAAGGTAGAGTCTGGCAGCCTGGAGGAGGACTGGGATTTCCTGCCACCCAAGAAGATCAAAGACCCTGAGGCCAAGAAACCTGAGGACTGGGATGAGCGGGAGAGGATTGACGACCCTGAAGACACCAAGCCTGAGGACTGGGATAAGCCTGAAAACATTCCTGATCCTGATGCCAAGAAGCCAGAGGACTGGGACGATGAAATGGATGGTGAATGGGAGCCTCCGATGATCACCAACCCTGAGTACAAGGGTGAATGGAAGCCTCGCAAAATTGACAACCCTGACTTCAAAGGAAAGTGGGTGCACCCAGAAATTGACAACCCTGAATACACTGCTGATGCTGAAGTCTACAAGTACGAAAGCATTGGTGTCCTTGGGCTTGACTTATGGCAGGTGAAAAGTGGCACAATCTTCGACAACTTCCTGATCACAAATGATTCAACATTTGCTGAAGAAGTGGGCAATGAAATGTGGGGTGCAACCAAGGACCCAGAGAAGAAAATGAAGGAGAGCCAGGAGGAAGAAGAGCGAAAGAAACGTGAGGAAGATGAGAAGAagataaaagaagaaacaaaggaggaggaggaagagggggaggagcaGAAAGAGGTGGAGGATGATGAGGAAGAAACAGACTCTAACCTCAAAGATGAGCTGTAATCACACAAACTCAGAGACACTCTGCCTGTTAAGAGACacttgggggaggggggttggggACCCTGCTGGACTTTGTTCACATTTTAGGCAGGCCTTGTAAGGGCTGGTCTTatcacaaaagaaagaacaaatcttggattttattttattttatgtttcccATAATCTCAACCTCCTTGTTTGAATTTCCCCCATAACGAACAAAGCAATGATCATCTGGCTGAGGCTTAGGGAATCTTGGCCAGTGTCTGCAATCAGCTTGTTGCTCTGGGTAAATCCAGTCCGTCGGCACCAGCAGAGAGCTTTGCCAGGGGAGGAGGATAGTCATTCATTCTTATGGGGTGGTGGCAGGTGGAATCAACTtgctgttattttcttatgttttaaaagacCAGTGTAATCTCTCAAACAgatagtttatatataaactgtatcaTTATTGTGcccctttcttgtttttatatgaattaatgcattgtttgcTCTAACCATTGAAATTAGTCTTcctttttctgtaattttgctCTGTAACCTGTTCATTTAAAACCTCAAGATATTGCATATTTCTAAAGATCATCATTTGAAAGCcttccatttactttttttttaaacatgttgtcCTCCCATGTCTGTCAATAGTCATATTGCACTTGAGTGAATGTTGTAAACGGTCATCTGTTAactcatcctgctgcttttacCGATGGGTCATTCGGACCTTATGTGTGGATGTTGAAAGTGCAGCTGAATAAATCCATATGGTCATTGGCTCTCCAGGATTTGTGACCTCATTTAGATGGGTTGATATTTCCAAtcattaaactgtttaaaaccccttttaaattaatgttatttatttttttcaatctaTGAACTGATTCCTACAGATACTGAACATTTGTTTGTAGGATTGTCCTGCTTGGCCTGTGATCAGTGGTTGTAGTTAACTACGCAAATCCGAATTGAAGATAAtctatgcctttttttttttttttttttttttttgagaaactAAGTGGTGTGGGATTGCTTT

Function

GO:

id name namespace
GO:0006457 protein folding biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0051082 unfolded protein binding molecular_function

KEGG:

id description
K08057 CALR; calreticulin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180105 lncRNA upstream 15623 3234653 ~ 3236347 (+) True G143192
TU180076 lncRNA upstream 152586 3099122 ~ 3099384 (+) True G143170
TU180072 lncRNA upstream 165576 3084372 ~ 3086394 (+) True G143166
TU180005 lncRNA upstream 490340 2720298 ~ 2761630 (+) True G143109
TU180000 lncRNA upstream 570422 2681304 ~ 2681548 (+) True G143107
TU180109 lncRNA downstream 48427 3310907 ~ 3376024 (+) True G143195
TU180138 lncRNA downstream 114589 3377069 ~ 3377271 (+) True G143218
TU180159 lncRNA downstream 318602 3581082 ~ 3588105 (+) True G143237
TU180232 lncRNA downstream 426678 3689158 ~ 3690193 (+) True G143302
TU180298 lncRNA downstream 644113 3906593 ~ 3906921 (+) True G143356
AMCG00004788 mRNA upstream 91761 3123267 ~ 3160209 (+) False AMCG00004788
AMCG00004786 mRNA upstream 249045 2998006 ~ 3002925 (+) True AMCG00004786
AMCG00004784 mRNA upstream 299346 2952311 ~ 2952624 (+) True AMCG00004784
AMCG00004783 mRNA upstream 693297 2548607 ~ 2558673 (+) True AMCG00004783
AMCG00004782 mRNA upstream 761280 2490454 ~ 2490690 (+) True AMCG00004782
AMCG00004792 mRNA downstream 40023 3302503 ~ 3307925 (+) True AMCG00004792
AMCG00004793 mRNA downstream 116250 3378730 ~ 3390366 (+) False AMCG00004793
AMCG00004795 mRNA downstream 270004 3532484 ~ 3556450 (+) True AMCG00004795
AMCG00004798 mRNA downstream 330920 3593400 ~ 3627243 (+) True AMCG00004798
AMCG00004796 mRNA downstream 370413 3632893 ~ 3642414 (+) True AMCG00004796
TU180082 other upstream 127488 3123081 ~ 3124482 (+) True AMCG00004788
TU180081 other upstream 127488 3123223 ~ 3124482 (+) False AMCG00004788
TU179967 other upstream 692890 2548587 ~ 2559080 (+) True G143075
TU179968 other upstream 731281 2440541 ~ 2520689 (+) False G143075
TU180140 other downstream 115335 3377815 ~ 3395158 (+) True AMCG00004793
TU180311 other downstream 686946 3949426 ~ 3949837 (+) True G143366
TU180351 other downstream 846542 4109022 ~ 4109655 (+) True G143404
TU180426 other downstream 1109229 4371709 ~ 4372089 (+) True G143471
TU180621 other downstream 2161223 5423703 ~ 5424121 (+) True G143626

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00070967 True 2513 mRNA 0.41 9 NC_007119.7 16582339 ~ 16592491 (-)