RNA id: AMCG00004796


Basic Information

Item Value
RNA id AMCG00004796
length 1673
RNA type mRNA
GC content 0.52
exon number 11
gene id AMCG00004796
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3632893 ~ 3642414 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGGGCCGCAGCTTTACGACTGTTGTCATGGTGCCCACAGCAACGGCAAACTCCCCGGCCGGGTGTGAGCATGCGTCAACGTGTGCTGCGGGAACAGCGCTCACACACACCTACTGCACTCTCTGGGCCTGGGACTTGGTAGGGTCTGCGTTGGAGTCGTCGAGTTGCGGCAGAAACATGTCGGAGGACGGGGTGTCCGCTCCTCTGCTGGGGAGATGTGGCTTCTACGTGGAGAAAAAGAAGCGCTAttgcaaaatggttgttgcCAAAGGAAAAACCTTCTGCGGGGAACACGCCATTGCCGCAacgCAGGAAGATGATAGAAAAAGAATCCCCTGCCCTTTGGATCCCAAACAcaCAGTGTTTGAAGATCAACTTGCAAAGCACCTCAAGAAGTGCAACTCTAGAGAGAAACCCAAACCCGTGTATTACATCCAGGACATTAATGCTGGCCACGAGGAGGATGTGGAGCAGatGCCCTTGTCTTCTAGATCGAAAGAAGATCTGGATTTGCTCATTAAAAGGTTAAAGAAAGCAATAAGGGGGCTAACCTGTAAACATGAGGAAAAAATATTATCTCACACTGCTTTGCATGAGGCTCTGAACGATACGAAGAATGGAGACTTTGCTTTCAAACACCTGAAGCAGCAGGCCTCCATTTTAGGTAAAGTGCCCTTCTTGAGAGATCAGAAGCCCCCAGTGGTGGGAATTGGCAAACACTTGTGTGGAACAGCTACAGATCTTGCTCTGAGGTGTTTGCTGGAGAGCCACCCCTGCAACAGTGAGGCTAGGGATACAGAGCCATCACAGAAACGCCTGAGGCTGGAGCTGCCTGATGGAGGGAGTGGGGAGGTGGAGGAAGGCCAGCCTAGCTTGGCCCCAGATCCCAGCTCAGAGGCAAGAAAGGGGCTGAAGGTGGCAGGGGTGGCCATCGCGCTGTGCTGCCATCATCGCTGCGACTGGAGGCACTACGTGGGCAGGGAGTTCTTCAGAGTCCTGGGGCTGGGGGCCACGGAGTTCTCGGCCTTCCAGCGCATGTCAAGCTGGGCCACCTGTGGCCTGAGGAGGCCCCACAGTGACCGGACTCCCCCACAGGAAAACACAGAGGACCAAGAGGAGCATGAGCAAGGAGTGGAGAGTGAGAACAGCTTTGATGGGGTGCTCTGTGCTGAAGACCGGGAGCACATTGGCCGTCTCTGTAAGCTCTTGATAGATCACGGCCGGGTGTATTACCTGCAACAGAAAGGCTACACGGCTATGTTACAGTACTACACCAGTCCGGATGTCTCCTTGGAGAACGTGCTGCTCACTGCCTTCCCTGCCAAGACTACATAACACTTCTGAAAGCCCATTCTGCACAGCTGCGGTTTATCAGTGGGTGAAAGCAGGTGGGGTGTAGACATCTCTGAAGGGAAAGTTTTAAGTTTGCAGAAGGCATCTCTCTTGACTGGGTGACcaacagtggagagagagaaagctgaAGTGGAACCCCACTGCCACTCTCTCACAGTGTCAGCGTCTCCTTCACCGCCTCAACTGTCACGTTTAATACAGACGTGTAATTTGTATTGGatcctaaaacaaaaatgaaaaacatttgatttttttattatattttttttaactggctATACAaatttttccattaaaatccTTCAGTTTCCATCATGAAA

Function

GO: NA

KEGG:

id description
K15446 TRM13, CCDC76; tRNA:m4X modification enzyme

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180159 lncRNA upstream 44788 3581082 ~ 3588105 (+) True G143237
TU180138 lncRNA upstream 255622 3377069 ~ 3377271 (+) True G143218
TU180109 lncRNA upstream 256869 3310907 ~ 3376024 (+) True G143195
TU180105 lncRNA upstream 396546 3234653 ~ 3236347 (+) True G143192
TU180076 lncRNA upstream 533509 3099122 ~ 3099384 (+) True G143170
TU180232 lncRNA downstream 46744 3689158 ~ 3690193 (+) True G143302
TU180298 lncRNA downstream 264179 3906593 ~ 3906921 (+) True G143356
TU180325 lncRNA downstream 441685 4084099 ~ 4089273 (+) True G143380
TU180350 lncRNA downstream 459848 4102262 ~ 4103856 (+) True G143403
TU180352 lncRNA downstream 470847 4113261 ~ 4113488 (+) True G143405
AMCG00004798 mRNA upstream 5650 3593400 ~ 3627243 (+) True AMCG00004798
AMCG00004795 mRNA upstream 76443 3532484 ~ 3556450 (+) True AMCG00004795
AMCG00004793 mRNA upstream 242527 3378730 ~ 3390366 (+) False AMCG00004793
AMCG00004792 mRNA upstream 324968 3302503 ~ 3307925 (+) True AMCG00004792
AMCG00004791 mRNA upstream 370413 3251970 ~ 3262480 (+) True AMCG00004791
AMCG00004797 mRNA downstream 36094 3678508 ~ 3688735 (+) True AMCG00004797
AMCG00004805 mRNA downstream 60071 3702485 ~ 3720008 (+) True AMCG00004805
AMCG00004804 mRNA downstream 102618 3745032 ~ 3764307 (+) True AMCG00004804
AMCG00004803 mRNA downstream 134949 3777363 ~ 3778397 (+) True AMCG00004803
AMCG00004806 mRNA downstream 140384 3782798 ~ 3791933 (+) True AMCG00004806
TU180140 other upstream 237735 3377815 ~ 3395158 (+) True AMCG00004793
TU180082 other upstream 508411 3123081 ~ 3124482 (+) True AMCG00004788
TU180081 other upstream 508411 3123223 ~ 3124482 (+) False AMCG00004788
TU179967 other upstream 1073813 2548587 ~ 2559080 (+) True G143075
TU179968 other upstream 1112204 2440541 ~ 2520689 (+) False G143075
TU180311 other downstream 307012 3949426 ~ 3949837 (+) True G143366
TU180351 other downstream 466608 4109022 ~ 4109655 (+) True G143404
TU180426 other downstream 729295 4371709 ~ 4372089 (+) True G143471
TU180621 other downstream 1781289 5423703 ~ 5424121 (+) True G143626
TU180912 other downstream 4086975 7729389 ~ 7731000 (+) False AMCG00004870

Expression Profile