Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00004797 |
| length | 1014 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 11 |
| gene id | AMCG00004797 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030140.1 |
| NCBI id | CM030140.1 |
| chromosome length | 22460246 |
| location | 3678508 ~ 3688735 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006396 | RNA processing | biological_process |
| GO:0005524 | ATP binding | molecular_function |
| GO:0003963 | RNA-3'-phosphate cyclase activity | molecular_function |
| id | description |
|---|---|
| K01974 | RTCA, rtcA; RNA 3'-terminal phosphate cyclase (ATP) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU180159 | lncRNA | upstream | 90403 | 3581082 ~ 3588105 (+) | True | G143237 |
| TU180138 | lncRNA | upstream | 301237 | 3377069 ~ 3377271 (+) | True | G143218 |
| TU180109 | lncRNA | upstream | 302484 | 3310907 ~ 3376024 (+) | True | G143195 |
| TU180105 | lncRNA | upstream | 442161 | 3234653 ~ 3236347 (+) | True | G143192 |
| TU180076 | lncRNA | upstream | 579124 | 3099122 ~ 3099384 (+) | True | G143170 |
| TU180232 | lncRNA | downstream | 423 | 3689158 ~ 3690193 (+) | True | G143302 |
| TU180298 | lncRNA | downstream | 217858 | 3906593 ~ 3906921 (+) | True | G143356 |
| TU180325 | lncRNA | downstream | 395364 | 4084099 ~ 4089273 (+) | True | G143380 |
| TU180350 | lncRNA | downstream | 413527 | 4102262 ~ 4103856 (+) | True | G143403 |
| TU180352 | lncRNA | downstream | 424526 | 4113261 ~ 4113488 (+) | True | G143405 |
| AMCG00004796 | mRNA | upstream | 36094 | 3632893 ~ 3642414 (+) | True | AMCG00004796 |
| AMCG00004798 | mRNA | upstream | 51265 | 3593400 ~ 3627243 (+) | True | AMCG00004798 |
| AMCG00004795 | mRNA | upstream | 122058 | 3532484 ~ 3556450 (+) | True | AMCG00004795 |
| AMCG00004793 | mRNA | upstream | 288142 | 3378730 ~ 3390366 (+) | False | AMCG00004793 |
| AMCG00004792 | mRNA | upstream | 370583 | 3302503 ~ 3307925 (+) | True | AMCG00004792 |
| AMCG00004805 | mRNA | downstream | 13750 | 3702485 ~ 3720008 (+) | True | AMCG00004805 |
| AMCG00004804 | mRNA | downstream | 56297 | 3745032 ~ 3764307 (+) | True | AMCG00004804 |
| AMCG00004803 | mRNA | downstream | 88628 | 3777363 ~ 3778397 (+) | True | AMCG00004803 |
| AMCG00004806 | mRNA | downstream | 94063 | 3782798 ~ 3791933 (+) | True | AMCG00004806 |
| AMCG00004807 | mRNA | downstream | 140306 | 3829041 ~ 3841272 (+) | True | AMCG00004807 |
| TU180140 | other | upstream | 283350 | 3377815 ~ 3395158 (+) | True | AMCG00004793 |
| TU180082 | other | upstream | 554026 | 3123081 ~ 3124482 (+) | True | AMCG00004788 |
| TU180081 | other | upstream | 554026 | 3123223 ~ 3124482 (+) | False | AMCG00004788 |
| TU179967 | other | upstream | 1119428 | 2548587 ~ 2559080 (+) | True | G143075 |
| TU179968 | other | upstream | 1157819 | 2440541 ~ 2520689 (+) | False | G143075 |
| TU180311 | other | downstream | 260691 | 3949426 ~ 3949837 (+) | True | G143366 |
| TU180351 | other | downstream | 420287 | 4109022 ~ 4109655 (+) | True | G143404 |
| TU180426 | other | downstream | 682974 | 4371709 ~ 4372089 (+) | True | G143471 |
| TU180621 | other | downstream | 1734968 | 5423703 ~ 5424121 (+) | True | G143626 |
| TU180912 | other | downstream | 4040654 | 7729389 ~ 7731000 (+) | False | AMCG00004870 |
