RNA id: AMCG00004801


Basic Information

Item Value
RNA id AMCG00004801
length 1500
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00004801
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3660865 ~ 3674824 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGCAGTAACAACCCTGAGAGATTCATTCAAGTTGATGAGAAGCTTGCTCTCCGCACACAAGTACAGGTCCTGCTGCTCCAGACTCCGGGCTGTTACACCTCAGTACACATCCACGCTGCGGCGCGCCTCTCCCAGCATTAGTCCGCAGTATCGCTACTTCAGATCCAGCCCACGTGAATTTCAGTGTTGGTCCAATAGTGCCAAGTGTTTTGTGATTTCGAGTGAAAcgtactttttacattttatttattcagtttccTTTGGACCAATTGTACAATTTAAGCTATCAGACATTGGAGAAGGCATCACTGAAGTCACCGTAAAAGAATGGTATGTAAAAGAAGGGGACACGGTGTCTCAGTTTGACAGTATCTGTGAGGTCCAGAGCGACAAAGCTTCTGTCACCATCACCAGCCGCTACGATGGAGTGATCCGGAAGCTATACTATGAGGCTGACACCACAGCCTATGTCGGCAAGCCCCTGGTGGACATCGAGACGGACAGTGTGAAAGAAGGTGCCTTGGAGGAGGATGTGGTGGAGGCTCCTGCCGTCTCCCATGATGAACACACCCACCAGGAGATCAAGGGCCAGAAGACCCAGGCCACCCCTGCAGTCCGGCGCCTCGCAATGGAGAACAATaTCAAGCTGAGTGAAGTGGTAGGGACGGGGAAAGAGGGGCGTATTCTGAAAGAGGATATCCTTAACTACCTGTCAAAGCAGACTGGGGCCATCCTTCCACTTTCCCCCACCTCTGAGATCATGCCACCCCCTCCCCAGGGGCCGCCCCCTGCTGCTAAACACAAAGACACTGTGCCCAGTTTCCACAAGGCAATGGTCAAAACCATGACAGCTGCCTTAAAGATCCCCCACTTTGGCTACTGTGACGAGGTGGACCTGACCGAGCTGGTGAAGCTGCGCTCGGCACTGAAGTCAGTGGCTGAACACCGAGGGATTAAGCTCAGTTACATGCCATTCTTTATCAAGGCGGCATCTCTGGGGTTACTGCACTACCCAATCCTCAACGCATCCATAGACGAGGGCTGTCAGAACATCACCTACAAGGCGGCCCACAACATTGGACTGGCCATGGACACGCAGCAGGGCCTCATAGTACCCAATGTGAAGAACGTGCAGATGCTGAGTATACTCGACATCGCCATGGAGCTTGTCCGCCTGCAGACTCTGGGGGCGACGGGGCAGCTGGGGGCAGGCGACCTAACGGGGGGCACTTTCACCCTCTCCAACATTGGATCAATTGGTGGAACGTATGCAAAACCTGTGATTCTGCCCCCTGAAGTGGCAATTGGGGCTCTTGGCAAGATACAGGTTCTGCCCAGGTTCAATGCCAGAGGGGAGGTGATGAAGGCCCAGATTATGAATGTAAGCTGGTCGGCCGATCACCGGATAATAGATGGAGCCACCATGTGCCGCTTCTCCAACCTGTGGAAGTCCTACTTGGAAAACCCAGCTTCAATGCTCATGGACCTgaagtga

Function

GO:

id name namespace
GO:0009081 branched-chain amino acid metabolic process biological_process
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K09699 DBT, bkdB; 2-oxoisovalerate dehydrogenase E2 component (dihydrolipoyl transacylase)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180182 lncRNA downstream 69560 3589995 ~ 3591305 (-) True G143258
TU180180 lncRNA downstream 78682 3581150 ~ 3582183 (-) True G143256
TU180119 lncRNA downstream 285142 3373033 ~ 3375723 (-) True G143204
TU180122 lncRNA downstream 402939 3255811 ~ 3257926 (-) True G143206
TU180102 lncRNA downstream 436375 3224227 ~ 3224490 (-) True G143189
TU180247 lncRNA upstream 73104 3747928 ~ 3770343 (-) True G143311
TU180255 lncRNA upstream 96746 3771570 ~ 3771882 (-) True G143318
TU180296 lncRNA upstream 223392 3898216 ~ 3902159 (-) True G143355
TU180315 lncRNA upstream 274591 3949415 ~ 3949837 (-) True G143370
TU180317 lncRNA upstream 297492 3972316 ~ 3972545 (-) True G143372
AMCG00004802 mRNA downstream 6860 3648760 ~ 3654005 (-) True AMCG00004802
AMCG00004800 mRNA downstream 12665 3641490 ~ 3648200 (-) True AMCG00004800
AMCG00004799 mRNA downstream 27962 3612911 ~ 3632903 (-) True AMCG00004799
AMCG00004794 mRNA downstream 244581 3405849 ~ 3416284 (-) True AMCG00004794
AMCG00004790 mRNA downstream 443636 3120229 ~ 3217229 (-) True AMCG00004790
AMCG00004808 mRNA upstream 181672 3856496 ~ 3864079 (-) True AMCG00004808
AMCG00004811 mRNA upstream 233323 3908147 ~ 3914961 (-) True AMCG00004811
AMCG00004812 mRNA upstream 257302 3932126 ~ 3935005 (-) True AMCG00004812
AMCG00004819 mRNA upstream 434258 4109082 ~ 4114193 (-) True AMCG00004819
AMCG00004820 mRNA upstream 458885 4133709 ~ 4150001 (-) True AMCG00004820
TU180096 other downstream 460698 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 500192 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 950861 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 3014486 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 3530162 127778 ~ 130703 (-) True G142773
TU180357 other upstream 438923 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 2061985 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 4679165 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 5161536 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 5198061 8872885 ~ 8906594 (-) True G144115

Expression Profile