RNA id: AMCG00004802


Basic Information

Item Value
RNA id AMCG00004802
length 453
RNA type mRNA
GC content 0.54
exon number 3
gene id AMCG00004802
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3648760 ~ 3654005 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTCCACAAGGGATTCTGGGAAGCCATTTAGGAACCCAGTGGGCTCGAAGTCCAGAGACCCACAGCTCCAGAGACAGTGCAGCAACAGTAGTACCAGCTGCGTGAAAAAGCAGCATGCTACAAAACGGGACTCTTGGGTCACCAGGAGGGAGGTATCGCTCCACAATATGCGGATATCGACTTCAAAGTCCCTCGTCTCAGCTAATGCGTTTTCGTGGTCCAAAACTTTGGAGCCGACCTTAGAGAACAGTTACCAGCCGCAGCCGGAAAGGCGCTTCTCGGTGGAAGAAACGCAGGCGGTCATTAAAGCAGTCGCGGATGATTTGCTGCAGGATGTGGAGTATGACGGAGAGGCGTGTTCAGCGCTAACTGTGAGGCTGGCTGAGCGCATCAAAGAGGCTGCGAAGGGACTATTGTATCCGCGtGTAGAtCCTCGTCGAAACTgctga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180182 lncRNA downstream 57455 3589995 ~ 3591305 (-) True G143258
TU180180 lncRNA downstream 66577 3581150 ~ 3582183 (-) True G143256
TU180119 lncRNA downstream 273037 3373033 ~ 3375723 (-) True G143204
TU180122 lncRNA downstream 390834 3255811 ~ 3257926 (-) True G143206
TU180102 lncRNA downstream 424270 3224227 ~ 3224490 (-) True G143189
TU180247 lncRNA upstream 93923 3747928 ~ 3770343 (-) True G143311
TU180255 lncRNA upstream 117565 3771570 ~ 3771882 (-) True G143318
TU180296 lncRNA upstream 244211 3898216 ~ 3902159 (-) True G143355
TU180315 lncRNA upstream 295410 3949415 ~ 3949837 (-) True G143370
TU180317 lncRNA upstream 318311 3972316 ~ 3972545 (-) True G143372
AMCG00004800 mRNA downstream 560 3641490 ~ 3648200 (-) True AMCG00004800
AMCG00004799 mRNA downstream 15857 3612911 ~ 3632903 (-) True AMCG00004799
AMCG00004794 mRNA downstream 232476 3405849 ~ 3416284 (-) True AMCG00004794
AMCG00004790 mRNA downstream 431531 3120229 ~ 3217229 (-) True AMCG00004790
AMCG00004789 mRNA downstream 601046 3037182 ~ 3047714 (-) True AMCG00004789
AMCG00004801 mRNA upstream 6860 3660865 ~ 3674824 (-) True AMCG00004801
AMCG00004808 mRNA upstream 202491 3856496 ~ 3864079 (-) True AMCG00004808
AMCG00004811 mRNA upstream 254142 3908147 ~ 3914961 (-) True AMCG00004811
AMCG00004812 mRNA upstream 278121 3932126 ~ 3935005 (-) True AMCG00004812
AMCG00004819 mRNA upstream 455077 4109082 ~ 4114193 (-) True AMCG00004819
TU180096 other downstream 448593 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 488087 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 938756 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 3002381 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 3518057 127778 ~ 130703 (-) True G142773
TU180357 other upstream 459742 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 2082804 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 4699984 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 5182355 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 5218880 8872885 ~ 8906594 (-) True G144115

Expression Profile