RNA id: AMCG00004806


Basic Information

Item Value
RNA id AMCG00004806
length 2311
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00004806
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3782798 ~ 3791933 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGACTGGAGAAAGTGGGAATGTCCAGTTCCCCGGAGAGACATTTTGCCTCCCTTGTAATGTAACGTATTCAATATAAATCGCACTATTCTGTGCGCAGCTGAGCATTGCAGAAGACATCAACCGCTGTTTCAATCTCGGTGAAATGGATATAAAATACTTGGCAATCCTGCACTTGTGTTTGATCCTGTCAGTCGCAGGCAGCTACCAGGATGTGGGCCAGGTTATTATTAAGCCCCTTGGAAAAGAGCTGACAGTCAGTGTGGGCAGCTCCTTGAATCTGACCTGTGAgtacacagcacagtgcacCGGGGGTATCACCTACACCTGGAAAAAAGTGGatactgaaacagaaaaaaacatcataagAAGTGGCAGCACTTTGAGTATTACCGTGGTAAAACTAGAAGATGAAGGGGTATATATATGTGAAGTGCCATGTGTGAAAAATATCAAGAAAGTCACTGTCCGTGTTTACTCACTGGCAGAGCCTGTAATAGAAATGCCCAAGGATTTGAAAGACAATACTACTGTGGCTATAACATGCAGTGTGAATTCCATACATCCTCCGGGTGTCGTGAACATTTCATGGTACCAGGGAGATAACATGCTGTTCAGTGAAAAGAAGGATAGTGATGATACCCCGATTTCTTTCACACTGTCAATTCATCTGAATAAAGAGCAGCATCATGGGAAGAAGATCAAATGCATTATGCAACTGGAAACCTTGAATGTCAGTAAAGAACAATTTGAAATACTGCATATATACCatatGCCATCAGACGTTAATATTGAAGTGCCATCTTCCTTGACTGAGGGGAAGGCGTTGTTAATGAGCTGCACCAGCACAGGGTATCCCAACCCTGCCATACAATGGGAGAAGATTGATCAGCCTTGGCCTATACACTTACAAAGGCACCCCAATGGCACAGTTACTGGCCTGCTTGCCCCAGCCGACAGTGGTCAATACCAGTGCACTGCCAGCAACAGCCAGGGCACAAAATCAAATCTGATTACCTTGGATGTGCAGTATGGTCCAACAAACACCTCCATAATTTCTTCTAAGGGGCatttcatccaggaaggagagTTTCTGAATCTGACCTGTGTGTCTGAGAGCCATCCCAAAGTCAAGTGCTACAAATGGAGCATGATCCCAGAGCTGTCTTTGCCCAAGGATTTGACACCGTATGATGGTTATCTAACCATTAAGAGCTTCCATAAGGAGCATGAAGGGATATACGAGTGTGAGGTGACCCACCagaatggaaaaacacagaggGCTTACTTTAATGTCATCCTTATAGAACCGGAGAGGGAGATGATAAGTCCAGCTCCCCAGCTACCaggggctgtgggggggggtgtcatCTGTGGATTGCTTGTAGGAGGAATTTGTGGATTCCTATTGGCCAAATGGCTGAAGTGACAGCTAATGACCCACATACAGCAACCCTCCAGGAGAATCTCAGTGTGCATCGCCGGATAACTTCGTTGGTCTACGCAGGATGCATAGACGCTCCCAATTGCTCCAGTTTCATTAGGCCCCTGACCCTGACACCACGGCCTTGTCTACAGCTGGTTTCTGGtctatgaaaaatgtattcctaGTCCTAGAGAGCCACTATCCTGCTGGTTGTATAGTCCACTTAACATCTGCAAAGGTTATGGAGCTGCAAACAAGAGCTCATTTTAGActaatgattttaataattggATGAAGTGAAAATCTGAATAGCCAACAGCTCTGCTGAACCAAGGCTGCATATCACTGGTCAAACTAATTGCTACCACACTCCCATAGCGTTATGTTGACCTGGTTAGTAGTAAACTGTTTTCAGTGCATAACTGGAGCCATTTATGTCTTCTCTCTAAAATGGTTCAGAAAGTCCCTTGACCACAGCATCCTGCTGCTCATAGAATGCAAGGTTTTTTATGTTATACTGTATACAAATATGATCAAAGATGCCCTTCCACCCACTCCATTTGAGACATGcgaagaatatattttaataaattattgagCTATGGCTACTCTTCTCTTACAGACAATGGGAATGTCTATTTCCAGCACTAACATAATGTAAATGAAGTGCAACTCTTTTTTTCTATTGTACCCCCTCTCCCCTTTCCCCCCTCTGGTGATATGGGCAAGAGTAATCTTTTTGTACATTATCTATAATCCTGACAGTGGCTTTTATCCTCATTTGATATCCTACTTTCCTACAATAACAGATAAAGAATGTTCATGTTTCTTGCATACCTTGCATGATCAGTCTGCTATgttcaataaaaatgtacaacgGCAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180232 lncRNA upstream 92605 3689158 ~ 3690193 (+) True G143302
TU180159 lncRNA upstream 194693 3581082 ~ 3588105 (+) True G143237
TU180138 lncRNA upstream 405527 3377069 ~ 3377271 (+) True G143218
TU180109 lncRNA upstream 406774 3310907 ~ 3376024 (+) True G143195
TU180105 lncRNA upstream 546451 3234653 ~ 3236347 (+) True G143192
TU180298 lncRNA downstream 114660 3906593 ~ 3906921 (+) True G143356
TU180325 lncRNA downstream 292166 4084099 ~ 4089273 (+) True G143380
TU180350 lncRNA downstream 310329 4102262 ~ 4103856 (+) True G143403
TU180352 lncRNA downstream 321328 4113261 ~ 4113488 (+) True G143405
TU180361 lncRNA downstream 341342 4133275 ~ 4133909 (+) True G143414
AMCG00004803 mRNA upstream 4401 3777363 ~ 3778397 (+) True AMCG00004803
AMCG00004804 mRNA upstream 18491 3745032 ~ 3764307 (+) True AMCG00004804
AMCG00004805 mRNA upstream 62790 3702485 ~ 3720008 (+) True AMCG00004805
AMCG00004797 mRNA upstream 94063 3678508 ~ 3688735 (+) True AMCG00004797
AMCG00004796 mRNA upstream 140384 3632893 ~ 3642414 (+) True AMCG00004796
AMCG00004807 mRNA downstream 37108 3829041 ~ 3841272 (+) True AMCG00004807
AMCG00004809 mRNA downstream 72625 3864558 ~ 3879836 (+) True AMCG00004809
AMCG00004810 mRNA downstream 106006 3897939 ~ 3898609 (+) True AMCG00004810
AMCG00004813 mRNA downstream 168662 3960595 ~ 3997246 (+) True AMCG00004813
AMCG00004815 mRNA downstream 212435 4004368 ~ 4021538 (+) True AMCG00004815
TU180140 other upstream 387640 3377815 ~ 3395158 (+) True AMCG00004793
TU180082 other upstream 658316 3123081 ~ 3124482 (+) True AMCG00004788
TU180081 other upstream 658316 3123223 ~ 3124482 (+) False AMCG00004788
TU179967 other upstream 1223718 2548587 ~ 2559080 (+) True G143075
TU179968 other upstream 1262109 2440541 ~ 2520689 (+) False G143075
TU180311 other downstream 157493 3949426 ~ 3949837 (+) True G143366
TU180351 other downstream 317089 4109022 ~ 4109655 (+) True G143404
TU180426 other downstream 579776 4371709 ~ 4372089 (+) True G143471
TU180621 other downstream 1631770 5423703 ~ 5424121 (+) True G143626
TU180912 other downstream 3937456 7729389 ~ 7731000 (+) False AMCG00004870

Expression Profile