RNA id: AMCG00004808


Basic Information

Item Value
RNA id AMCG00004808
length 4013
RNA type mRNA
GC content 0.43
exon number 4
gene id AMCG00004808
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3856496 ~ 3864079 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTACTTTGGAGTACATCTGCTCGCATCAGCAGACAGCAGACGTATGCGAGGCAGCTGGTGCAATATGTACGTATGCATATATTAGCATACTCAAAACCTGTATTTCCAATGCCCCACTCCGCGTCACGGCAGCCGTTGCCCGCTTCAGGGTGAAGGATCCCAAAGTTGCCAAATGACgcaggtctgcgctgctccgccatTGGGATCGCTACACCTCGGCAGAgatgcgcagaactgcggacatctgcgctacaacgCGACACGAAAGTTGCGCACGGTTTTACGTGTTGACGGCAGATCCCATTCAATGAGAAAGCGTCCGACTGCATCCAGCCCATGCTTTGAAATGAGGATCTGTTATCGTGCCTGCAAGATGCACAGATCCAAACGCATTTACCTGCTGGTGCCCATCCTCCTGCTGGTGGGGGCGACTCTGACGGCCCTGCTCCCTGCCTCGGAGGAACGAGGGGCGGAGGTCCTCCGGAGAGGCAGCCTGCTCCGGTCACGGCAAGGCTCTCCCCGGGACTCCTTTACCATCGTCATGCAGACCTACAACCGCACCGACATCCTGCTCAAGCTGCTCAATCACTACCAGGCCATGCCCCAGCTGCACAAGATCATAATCGTCTGGAACAGCCTGGGTGAAAAGGTGCCCCGGGAGCTGTGGGAAGCTTTGGGCCCACACCCTGTGCCCGTGGTTTTCAAAGAGCAGGAGGTCAACCTCATGAGGAACAGGCTGCAGCTTTTTCCAGAGCAGGAAACTGAAGCTGTTTTAATGCTGGATGATGACACCCTGATCAGCACTCCTGATATTGACTTTGCCTTTTCTGTCTGGAAGCAATTCCCTGATCAGATCGTGGGCTTCGTCCCACGGAAGCACGTCACAACACCCTCAGGGGTGTACAGCTATGGCAGCTTTGAGCTCCAGGACCCCGCGGCAGGGCAGGGAGACCACTACTCCATGGTGCTGGTGGGGGCTGCATTCTTCCACAAGAAATACCTGCAAGCTTTCCAGAACCAACCGCCAGAGGTGCACAGACTGATCGACGACACGCAGAACTGTGACGACATCGCCGTCAACTTCCTGGTGGCCCAGCACACCCAGAAGCCTGCGGGGGTCTTCGTGAAGCCAGTGGACTTCCGTAACCTGGAGAAGGACGCCGCCAGTGGGTACCAGGGCATGTGGCACCGGGCCCATCACCTCCTGCAACGCTCTTACTGCCTCAACCGGCTGGCGCAGATCTATGGTCAGATGCCCCTGCGTTACACCAACATCATGATCTCACAGTTTGGCTTCCCCAGCTACGGCAACCACCGAGcctagaacaaagaccaaggagGTGCAAGGTTTAGACACTGGAGTGGGGGCTTTTCTTATTCCAAGtggtatgtttttctttaaattgattGTGGGGGGCTTGGTTAGGATTCAGCTGGCACACTTCTTTTCAGATACCCCAGTTGAATCCTTTGCATACCGCTCAATTGAAAGCAAGCTGTAAAAATCTGGTAGTATTTAAAgctatttgttattttttcagggGAGTAAAATGACGGGAAATGGTTCTTCCTGGTAGCAAATTGATTTGGTCCTTATGGGTTATTTTGCTATATACAAGGAGTATGCCTAAACCTCTCCACTCATTCAGTTTGTGGTTCTTTGGTCAGCTACTCCACTAAAAtacttataattattttcactaTTCCAAAATAACTTTAGTTCTGTTTATTACAGTGTTTAATGGATCCAGAACACATAGGATGAACAGAAAGTGATACCTCATAGTCTTCTCATTTGTGTAAGACAAATTGTTCTAGGGTTGCAATTTAAACAGAAGAGAACTACAAATATGAGGCCTGATTCTGTGACAGTATGGAATAATGTGAGTTTCTTTTGCACTATTTccttaaggggaaaaaaactaaaagagcTTCTGAATAAAGTGTAAAGCCACACACAACGTATGCCTCTTTCCCTTCAGTATACCtactgaagaagaagaaaaatcatGCATCTTTCTTCTCCAAAATACATCAAACTCTGAACTTAAGAGTGATATATGTAGTGCAAAAAggattttttgtatatacacGGGTTCTGGAGCCaaagtgtagttttttttttgttcaatgcacttgtttttgttttattgtaacaaATCAGGGGTGTGCTTTAGGTTTATTTCAGAGTTTATCCTTTTGTGTCACTAGAGGGCAGCAGGACCACACTCTCCTTGCTGTCAGACAGTGCACTCGAGCAAGTGTGATGTATAAAGTTAATCCACTAAGCATGGATTTATACAGCCGATTTGCAAACCCAGTACTTCCTGCCCATGCTTTTGTTATACCATTTAGTCATTTAGTAAACCATTTAGTTCACTTTTTATGTTAATTTCATAACATGGTGTGTATTCaacaaacatttactgtttatGTTGCTTCCAAATCAACAGGTTATTTATTACTTTCTGGGAATAACTGTAGAAATGCTCAAAGTGCCTGAAGCAGACACATTGATGTGCCTAGGCCAGATATGTTCAGATATCACCCAGTAAGTGGACATACTTTTTAATAGTGAAGGTTACTCAACCACAaccttctgtttcttttttttaaattatatcttACTTGAGCTTAATTTACTGAAATAATTGAGCAACTTGCACATTCTTTTCCCTAGGCCTTTAATAGCTGATGATTTGAGAGATGTACTGTACCCAATATAGCAGACCGAAGCCCTGAGAAGCGTAATATCAATCTAGTTAATCGGTGCAATGGCTTagaatatttgtatacattttatttttaagatttttaataCTTTACAGTGTTACAGGATTTGCAAGTCAGAGTGCAAagttatttacttacttatggTAAATTCAATTCCTTTTTCTCCCTGGAAATTTTTCTAAGATTGCCCTTGAGAAATCACCTTTGCTGAGTAAAGACCCTATTTACACTTTTGTAGGCTGCTGTTACCAGAAAATCAATATAACAACACACTTCCATGTTGCACATGACCCAAAAGAAACAGTCTTTTACCCGAGGCTTTGTCACTGCACGtctatgttgtgttttgttactttgttttttcttattgttgCAGGGAATATGGGTATGTTTTATTGGggaaaaacttttatttttatttttatctcctgTGCTtctaaaaacaatgaatgaataaagAGATTAATTACCTATACAAAAAGCATGTACTGTATTAATACCAAACCACAGTCAAGTTGTCATTGAAAGGAGGAAGAGTGGTAACTTACACCATATACTTAACAAGATCTATGATCTAATGAAAGTGTAACCAGAAATATATACAGAGGAATGGACAGTTCTTACAATGGACAACCGTTTTCCAGTACAATTAACCTGCAGCTCCTCTGTTCCCCAACAAAAGTGCAGAGAGATGGCAGGGTTTCCTGTAGAAATGTTCGTAGGCAAGGTGGGGGGCATATGTTTGGCCAGGCGGGCCACCTGGCCTGAATAGCACTGCGAGAAACTGGATGGAATCACAGGAAGCTGCAGAGTTCAAAACTTCCCCTTTTTGTGTATGTCAGTGCAGTCTCATACTTTTATTGCTGGCATTTTGATTGCTGGTTCCCcttatgaaggaaaaaaaaaattactataCTTTCCCACCACTTGGTTATGCTAATAGGCCAAAGATGGGTTACCGGGACAAgttgtattttgcattgaatataTTCTCtcttatttctgatgccttCTGATGCAAATGGTTAAATCCTCATGAGTCTGTTGTTTCAACATAAAtaactgcattgtttttaaatataattctgaaatgatTGGTTACTTCTTTTCTTAGTCTTATTCTGGGttatgcaaaatattaaaaatacatacaaaacattatgTAACCCTCAGACTATAcgtatacataaacacacaaagaataAACACATTGATATCCAAAGATAACTCGGATTCCAGATCTGtggcttgtttttttgtctcaAACAGCCCaaatcatt

Function

GO:

id name namespace
GO:1901135 carbohydrate derivative metabolic process biological_process

KEGG:

id description
K02369 EXTL2; alpha-1,4-N-acetylglucosaminyltransferase EXTL2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180255 lncRNA downstream 84614 3771570 ~ 3771882 (-) True G143318
TU180247 lncRNA downstream 86153 3747928 ~ 3770343 (-) True G143311
TU180182 lncRNA downstream 265191 3589995 ~ 3591305 (-) True G143258
TU180180 lncRNA downstream 274313 3581150 ~ 3582183 (-) True G143256
TU180119 lncRNA downstream 480773 3373033 ~ 3375723 (-) True G143204
TU180296 lncRNA upstream 34137 3898216 ~ 3902159 (-) True G143355
TU180315 lncRNA upstream 85336 3949415 ~ 3949837 (-) True G143370
TU180317 lncRNA upstream 108237 3972316 ~ 3972545 (-) True G143372
TU180342 lncRNA upstream 221367 4085446 ~ 4088993 (-) True G143396
TU180346 lncRNA upstream 230571 4094650 ~ 4098416 (-) True G143400
AMCG00004801 mRNA downstream 181672 3660865 ~ 3674824 (-) True AMCG00004801
AMCG00004802 mRNA downstream 202491 3648760 ~ 3654005 (-) True AMCG00004802
AMCG00004800 mRNA downstream 208296 3641490 ~ 3648200 (-) True AMCG00004800
AMCG00004799 mRNA downstream 223593 3612911 ~ 3632903 (-) True AMCG00004799
AMCG00004794 mRNA downstream 440212 3405849 ~ 3416284 (-) True AMCG00004794
AMCG00004811 mRNA upstream 44068 3908147 ~ 3914961 (-) True AMCG00004811
AMCG00004812 mRNA upstream 68047 3932126 ~ 3935005 (-) True AMCG00004812
AMCG00004819 mRNA upstream 245003 4109082 ~ 4114193 (-) True AMCG00004819
AMCG00004820 mRNA upstream 269630 4133709 ~ 4150001 (-) True AMCG00004820
AMCG00004823 mRNA upstream 336929 4201008 ~ 4217993 (-) True AMCG00004823
TU180096 other downstream 656329 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 695823 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 1146492 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 3210117 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 3725793 127778 ~ 130703 (-) True G142773
TU180357 other upstream 249668 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 1872730 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 4489910 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 4972281 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 5008806 8872885 ~ 8906594 (-) True G144115

Expression Profile