RNA id: AMCG00004811



Basic Information


Item Value
RNA id AMCG00004811
length 501
RNA type mRNA
GC content 0.54
exon number 4
gene id AMCG00004811
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 3908147 ~ 3914961 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTGTACAATTTCGGGGAGACTGTGTCTGTAGTGTTCTGGACAGACACTTGGAAACCAGAGAGCTTCTATGACAAAATTCAGAAGAACCGAGCCAATGGAATGCACACATTGTGCTTACTTGataTTAAAGTCAAGGAGCAGTCACTTGAGAATTTGATGAAGGGCCGCAAGATTTACGAGCCCCCCAGGTACATGAGCGTGAAGCAGGCCGCACAGCAGCTCCTGGAAATCGTCCTGAACCGGCGGGAGCAGAGCAAGGAGCTGGCGATCTCTGAAGACACCATCTGTGTGGGCTTGTCCAGGGTCGGGGCGGAGGATCAGTCGATCCGCGCTGGCACCCTGCAGCAGATGGCTTCGGCAGAGCTGGGGGCCCCCCTGCACTCGCTCATCATCACCGGGCACATGCACCCCCTAGAGATCGACATGCTCCGACTGTTCGCCATTGAACCGGAAACGTTCGACAACCTGAAAATGACGGACAGCTCCACTTACACATCTTAG

Function


GO:

id name namespace
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine biological_process
GO:0004164 diphthine synthase activity molecular_function

KEGG:

id description
K00586 DPH5; diphthine methyl ester synthase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU180296 lncRNA downstream 5988 3898216 ~ 3902159 (-) True G143355
TU180255 lncRNA downstream 136265 3771570 ~ 3771882 (-) True G143318
TU180247 lncRNA downstream 137804 3747928 ~ 3770343 (-) True G143311
TU180182 lncRNA downstream 316842 3589995 ~ 3591305 (-) True G143258
TU180180 lncRNA downstream 325964 3581150 ~ 3582183 (-) True G143256
TU180315 lncRNA upstream 34454 3949415 ~ 3949837 (-) True G143370
TU180317 lncRNA upstream 57355 3972316 ~ 3972545 (-) True G143372
TU180342 lncRNA upstream 170485 4085446 ~ 4088993 (-) True G143396
TU180346 lncRNA upstream 179689 4094650 ~ 4098416 (-) True G143400
TU180353 lncRNA upstream 192558 4107519 ~ 4108856 (-) True G143406
AMCG00004808 mRNA downstream 44068 3856496 ~ 3864079 (-) True AMCG00004808
AMCG00004801 mRNA downstream 233323 3660865 ~ 3674824 (-) True AMCG00004801
AMCG00004802 mRNA downstream 254142 3648760 ~ 3654005 (-) True AMCG00004802
AMCG00004800 mRNA downstream 259947 3641490 ~ 3648200 (-) True AMCG00004800
AMCG00004799 mRNA downstream 275244 3612911 ~ 3632903 (-) True AMCG00004799
AMCG00004812 mRNA upstream 17165 3932126 ~ 3935005 (-) True AMCG00004812
AMCG00004819 mRNA upstream 194121 4109082 ~ 4114193 (-) True AMCG00004819
AMCG00004820 mRNA upstream 218748 4133709 ~ 4150001 (-) True AMCG00004820
AMCG00004823 mRNA upstream 286047 4201008 ~ 4217993 (-) True AMCG00004823
AMCG00004824 mRNA upstream 410002 4324963 ~ 4359936 (-) True AMCG00004824
TU180096 other downstream 707980 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 747474 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 1198143 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 3261768 644004 ~ 646379 (-) True AMCG00004763
TU179586 other downstream 3777444 127778 ~ 130703 (-) True G142773
TU180357 other upstream 198786 4113747 ~ 4116414 (-) False AMCG00004819
TU180667 other upstream 1821848 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 4439028 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 4921399 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 4957924 8872885 ~ 8906594 (-) True G144115

Expression Profile