RNA id: AMCG00004820


Basic Information

Item Value
RNA id AMCG00004820
length 5384
RNA type mRNA
GC content 0.50
exon number 15
gene id AMCG00004820
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4133709 ~ 4150001 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAGGTCTGTTCACACACTCAGAGCCTGGGAGTTGTGGCCCCTGTTCCAGGAATGAACCCTAGACTGCTGGTCTTGGAGAAAGCACTTCGTTTGGCTCACCGCCACGCtagacaaaacaacaaacccCTCTTTTCCTGTTTCTTCCTGGGTTCAGTCATAGTGGATGATGATGAGGAAGGTGTTACAATTACAGTGGACCGGTTTGATCCAGGGCGAGAAGGGCAGGGCTCCCCCGGGAAGGTACCCACTGCCCTCTTGCCTGGTGACTTCTTGGTACCCTGTACAGTGAGCACCCAGGGCCCAGCTTTAGCAGACACCATTGTGCACTCTGCAGAAGACTTCCACATTGCATTCAAGATGCTTCAACATTGCTGCTGTAGTAGAGAACCTCTGGAGTCCTCCAAACTTCTTACAATGAAAGTGCATCTGAACTGCACAGAGCACATGGACAATGTGCGCCTCAACCTTCACTGGGCCGCTGTTACACTCGCAAACACTCTGGACGCAACCCCCATCAGACCAGTGCCCGTCATTCCCACTGCTCTGGCCAGGAACTTATCCAGCCCAATGAGCCTGGCACAGGTTCAAAACACCTGCAAATATGGGTTTCTGACTATGGACCAGACGCGCAAACTGCTCCTGATACTGGAGTCTGATCCTAAAGCATACACTTTACCACTTGTAGGGATATGGCTGAGTGGGATCACACACATTCATAGCCCCCAGGTGTGGACGTGTTGTCTGAGGTACCTGTTCAGCTCTTCACTGCATGACAGGGTGATGTCCGAGAGGGGCGCTTTCCTCGTGGTCCTGTACTCCCTGACGCACAGGGAGCCCGAGTTCTACCAGTGTCAGCTCTACAGTGGACAGAAGGAGCTGGGCTTCCAGCTACTCACAAGCACCGAGTCCATCAATCTTTATAAGAACGTGGAGCCATCTGAGAGCCGTCCGTTACAGTTCGAGCTCAGTGCAGAAAGCCAGAACCAGGAGAGGGAGTTCTTCCAGGAGGTTGCATCACGCGTGTCCTTCTCTAGCGCTGGTGTGAATTCTCCGCAGAACAAGCTCTCTGTCACTGACCAAGACTCAGGTGTGGAGGATGAAGATCTTTCTCCAAGACCATCCCCCAGCCCACATCCCCTCAGCCAGCAGCTACGACGGATTCACCCTTCAGTTCCGGAACTCTCCCTAGTGTTTGATGGTAATTTTGTCGAAGCAAGAAAAGTGGGGCTAGAGGCTCCTGCAAACAATCCACCCCCCACTACAGCCCCCCATTTTGCAAAAGGTGCTTTTCCACCACCGCCCCACAGTGCTCATCCAGGGGCAAAACTGCCCAGCCAGGGCCCCTTCGCAGGCCCTCCTGCCATCAGGAGGCCACTCACTCCTGCGATCCTGACAGAAAAGGGCTGCAAAGGGCGACTCAGTCCTGGACAGCATTTGCCTACCAGCCGGAAAGGAGGCCCTCCCGCCATAAAGAGCTCGGGGTCTTCTGCTTCATCcacatcctcctcttcctcctcttctacCCCAAGGAGTGGACCATCTCCCAACAGCTCCATTCTCCAGCTCAGATCTCAGCCGCCCATCTCCACCTCTAAGAGGGGCATTTCTCCTGTGGCCAGAATGGGGCAGCCCAGTACCCACAGACCACCCTCTCCTGCCCAGCCCCCTGGCTGTCGTGGCCTTAAGCACAGTGCTAGTGTCCCCCACCTACATGTCCAGGCGGCCAACTTTCACACTCCGTATCCTGGCCCCAACCCTGGCAGCGGCTGCAGTTGTCGACCCCAACATGGTAGTGGTCCTTACTATCGGTCAAACTCATGGCAAGGTCAGCCCAGTGCTGTGCCCGCAAGTCCCGGTCCCTGCTGCCCCTCTGACAGCACTGGAGACTGCAGTTTCCCTCCTTTCACGCAAGGTGTCGGCCGCCATTCCCTGGGGCAGTGTGGCCCGGTCTACATGACCAGCAGTCCTGTAGACCAGCCAAACCACGGGACCTGCCCCCCTGTACAGGAACCCAGTGTTGTGGCATTGCCCGCAGGACAGAAGACCAGTCCCTGTAAAGGGCACTGCTGCCTGGCCCAGTCCAGCTACAGGGCTGTGCCCACTTCCTGCCCTCCTCTGGACAATGCCGTGGGGCTGTTGCCAGCTGATGCTTACAGGATTCTGGTGGAGCAGGATCGGCAGCTGAAACTAATGCATGctcagATTCAGAAGCTGCTGGAGGCCCAGAGCAATCACCAGTGCTCCTCTAAAGGgccctgcacacacactccTCCACAGCAATCCGAGACGCAGGTggaggtggtggccacagagaCTCAGATGGGCCCTGGTGTGCAGTTGAGGAAGAGTGTCAGCATTGCAGTGAGCACAGGTGCTAGCTTGTTCTGGAGCCCATCTTCAGAGCAGGAGGAAGCCCAGGTGACTGAATGTCAGACCCCCTCTGTGTCCGCTGTCTCCACCTCCACAGAAGAGGACAGTGTTGCCTCCTCCCTCAGGCCTGTGGTCGCCCCCAGCTACTCTGAGAGCACGGCACACAAAGACACCTTGTCCTCAGACACGCACAGTTCACCTCCAAGAGCCCGGCCTCAGACATTATTTCAAAGCCCCGTGCTTGAGGAGGGCGGTGCTAGTCAACACCATCTGGAAATAACTGAGCAGGACAGTTGCCTGCAGATCAATAGTGTGCAAGATGAACAGAAGTTTTATCAAGATTTATTGGGCCAGGTGAACAGCCGTCTGGAAGCCTCTGTCCCCGAAGCTGAGCCGGAGCGAGAGAGACAGGCTGCCCTTCCAGACTCACTGCCCCCGAAGTCCCCCCCTGCATCTCGTGACACCAACCGAAGGAAGCCTTCGGGCAGCAAGCAACTTCCATGGCAGGATGACGTCCTCCGGGCCACTCTCAGACAGCTGCAGCAGCTGGGGGTCACAGTGGACCTCGGCTCCCTCGCAGGCAAGGCCACCAAGACCACGGTGGAGAGCGCCAGcaCACTGGCCTGCATAAACCCAGAGGCGGTCATCCCAAGACTCAGTTACATGTCCTTCAGCAATGTGGGAGCCAGTGGCCTCTGCCCCAGTGGCCCAGACTTGAGCTTGGAGGCCAATGCCATTGCCCTGAAGTACCTGAGCGACTCCCAGTTGACTCAGCTGTCAGTGAGGAGAGGAGACGGTCCGCTGCCTGCTGCCCTCCTGCAGCCCAGCCACGCTGAGAGGAGCATGGTGGGACTCAGTGTCATGTCGCCCAACAACATGTCAATCGCCACCAGGAAATACATGAAGAGGTATGGACTCATCGAGGCAGGGGACAGtagtgaagaggaggaggacaagGTGGAGGAGGAAGGGAGGCAGTGGGATAGAAAACCCATGGTAGAGGACAATGAGTTTATCTTGCCCGTACTGGGAAGGCTGAGCTTCAGGGCTGAGAACCTGGAGAGCACAGCTGATGCCCAGATCAGACTTACTGCCTCAGGACCGACTGGGGAGGGAAGTGGGGGTCAGGTTCTTAAGAACATCACCAACGAGGTACATCCCCCCCAGACTCTGAACCAGGACTCCCAGAGCCAGCTGCTCAGGGAACTCCGACCCAAAATGAAGCTCTTGGCTGATCAGGCTTCCCAGAACCGCGAGAAGGAGAATGGCATTCAGCTCTTTCCCGAGAAACTGCACCCGGCTTTGTCCGAAATGTTGAGGCCCAGCACCCAAGAATCTGTGGGGAATTTCTTGGATGTGAGTCGGTTACGCCAGCTCcccaaactgttttaaaaaggaCAAAGACATCTCTCTCCCATAGGAACTGAGTGTGGCATCTGTGTGCAATGACAATAACAAAGTTTTCTTATCTTGGGTTAACTCCAAATATTTTTATAACTTTCTTTTGCTTTAAGGTTCCGAAGTATTGCACCTGATTTTATTTGTGACTGCGCAGAGAACATCAATGCAGTTTTTATTCAGGATACAGTGCACAAGacataaaaacttaaaatctCTGATCTACAGGGCTTCATTAATTCAGTACCTCATTTTATAGGTCTGTGTAAGATCTCCCTGGGTGTTTACTATGGACAGTGATTAGTTagacaacataaatatatttgtgttgtctAAGGCCACAAGAGTAGTTGGAACCTGTTATGGACTTgcatcatattttttaatacagttcTAGATTTAAAAAACTTATAGCCCAGATAAACAGGCTCCGATCACATTTTcaccaaaaacaaatctactCACAGCTGTATTCTGTGTAGTCCCTATTTGTATCACCTGGTTACTTCATACTAAGGCTATTTTATGCTTTGCAGGCTGCTGGACTCTCTATGACACTTAATAGAATAAGAGAGAGCTTTAccctgtgatatatatatttttttaagaatgtagaGAAATCAGACAATCAAAACATGATTCGTCAGAGGAAAGCCAATGTTTTCAGTGAAGGTTATATGGTCACAATTGTAGTCTTCCAACACTTTTAATACCCACTGTGTGCCTTAATGTCTAGGGTGTGGTGTGCATTTCGATTGTTTGTGTGCTATCTGTGTCAATTTTCCACTGTGCTGCAGTAGGTGAAGCAGTCAGGTAGTCGCATGTTTTAGTAGTCATTCAGTTATCCTAGCTGTGATCCTAACACCCTGATCTGACAGGAAGTATTTCCACTGAGATTAATTCACATGTGCacagtttaaatattatttaaaatatggtttTAACCCATGACCTCAAACATTCCTTGCACAACCCCCAAGGCATTGTATGCAAAGTGGTTCTCTTGTTTCAGATATGTTGTAATTTAACATGACTCATCAGGCAAGCCCAGTAAACGATCTTGACAACGGTAACTAATCTACAGAAACAATCCTCTTCTGCTTCATCTCTCTGTTCATTCCTCTGCATCTGGTTGTTTTGAACAAAATCagtgttattgatttaaattgtatatatttaatttataaaaagctgaatttatttaaatgacaatgaATGTGTGCAAAGATTAACCTGGATTGGTTTTGGGGGTTTGTCACAGATTtattggacatttttattttttatatatatttgttttttttataataaagatcTTTGATTTTATCTGTACTTGACATGTTTCATATGAAAAATCTGATGGTATATACAATGGTAAATAATTGACTTTATAAAATAGGATTACATAACTGGAAAGTGTTTTTTACTTAAAGCAAACTGAAGTAGACTGATGGGTAAAACTCAAACTGGTTTATTGAgcttaacaataaataaagatggCACCTGTTCAGAACTTTAATTGAAACCACAAATCAAGTCCAGTACTATACTTTAGAGCTATTtcataaaatgcaattaagaaCACttgtaaaaatgctttaaataaataaagg

Function

GO:

id name namespace
GO:0007224 smoothened signaling pathway biological_process
GO:0070050 neuron cellular homeostasis biological_process
GO:0051225 spindle assembly biological_process
GO:0010171 body morphogenesis biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0005515 protein binding molecular_function

KEGG:

id description
K16724 STIL; SCL-interrupting locus protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180353 lncRNA downstream 24853 4107519 ~ 4108856 (-) True G143406
TU180346 lncRNA downstream 35293 4094650 ~ 4098416 (-) True G143400
TU180342 lncRNA downstream 44716 4085446 ~ 4088993 (-) True G143396
TU180317 lncRNA downstream 161164 3972316 ~ 3972545 (-) True G143372
TU180315 lncRNA downstream 183872 3949415 ~ 3949837 (-) True G143370
TU180381 lncRNA upstream 37957 4187958 ~ 4191281 (-) True G143430
TU180501 lncRNA upstream 641689 4791690 ~ 4858146 (-) True G143528
TU180512 lncRNA upstream 835387 4985388 ~ 4985694 (-) True G143539
TU180521 lncRNA upstream 866846 5016847 ~ 5017631 (-) True G143544
TU180607 lncRNA upstream 1177714 5327715 ~ 5402341 (-) True G143619
AMCG00004819 mRNA downstream 19516 4109082 ~ 4114193 (-) True AMCG00004819
AMCG00004812 mRNA downstream 198704 3932126 ~ 3935005 (-) True AMCG00004812
AMCG00004811 mRNA downstream 218748 3908147 ~ 3914961 (-) True AMCG00004811
AMCG00004808 mRNA downstream 269630 3856496 ~ 3864079 (-) True AMCG00004808
AMCG00004801 mRNA downstream 458885 3660865 ~ 3674824 (-) True AMCG00004801
AMCG00004823 mRNA upstream 51007 4201008 ~ 4217993 (-) True AMCG00004823
AMCG00004824 mRNA upstream 174962 4324963 ~ 4359936 (-) True AMCG00004824
AMCG00004829 mRNA upstream 289539 4439540 ~ 4482780 (-) True AMCG00004829
AMCG00004828 mRNA upstream 426415 4576416 ~ 4591430 (-) True AMCG00004828
AMCG00004830 mRNA upstream 527472 4677473 ~ 4686323 (-) True AMCG00004830
TU180357 other downstream 17295 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 933542 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 973036 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 1423705 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 3487330 644004 ~ 646379 (-) True AMCG00004763
TU180667 other upstream 1586808 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 4203988 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 4686359 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 4722884 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 8004124 12154125 ~ 12156378 (-) False AMCG00005011

Expression Profile