RNA id: AMCG00004823


Basic Information

Item Value
RNA id AMCG00004823
length 4853
RNA type mRNA
GC content 0.42
exon number 8
gene id AMCG00004823
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4201008 ~ 4217993 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GATGGAGATCAAATCAGCAATGGCGATAGAGGGGAAGGCGTCGAGTTTCTGCACCTCAACAGAAAATACCATCTAGACCTCATCATTATTGTTACCGAGTGATTACTGGAGTATGAGGGAGCCCAGACTTTGATGAGCACGGCCACAGCTGCAGCATGTCGATGGAGGACCCGTTTTTCGTGGTGAAGGGGGAGGTGCAGAAGGCAGTGAACACTGCACAGGGGCTGTACCAGCGATGGAGCGAGCTCCTGCAGGACCCCAGTGGAGCCACCAAGGAGGAGGTGGACTGGACCACCAACGAGCTCCGCAACAGCCTGCGCTCCATTGAGTGGGACCTGGAGGACCTAGATGAAACCATCAATATCCTCTTGCTGTGTGTCCTGTCATCAGGCAGTGTCTTCCTTAAATCTGGTGTAAGTATAGTGGAGTCCAACCCAAGGAAATTCAACCTGGACACCGTGGAGCTGACAAAGAGGAAAGCCTTTATCACCAGTACACGGCAGATTGTGAAGGAAATGAAGGACCATATGTCTAGCCCTATGGCACAGGCGATGTCAGAGCGTAAAAACAGACAGGCTCTGTTGGGAGGCAACATGACTCAAGCTCCAGGATGGCAGGCTGGGGGGAACAAATACACACGGCTGGACCGCGAGCTACAATCTGCCAACTCCCAGTTCATAGATGACCAGCAGGCTCAACAACAGCTCATCGCAGAGCAGCAGGATGATCAGCTGGAGCTGGTATCGGGCAGCATCGGCGTACTGAAGAACATGTCGCAGCGCATTGgccaggagctggaggagcaggCTGTGATGCTTGACGACTTCACTCACGATATGGACAACACCCAATCCCGGCTGGACAACGTCATGAAGAAGCTGGCCAAAGTCTCCCACATGACCAGTGATCGACGCCAGTGGTGTGCCATCGGGATCCTCCTGGCCATCCTGTTTGTAGTGCTGATTCTCTTCTTCGTCCTGTGATCAGTTGAAGCTCCCTCAGACTGTGCTGATTGAGGACCCGGTCTCCCTGAGCGTTGGACTTGTACAGTGAAGAGACGGCAGAACCTTTTTCACTCCtgctatgtttttcttttgtaatgttAAGAGAAACATGTTTACGGCTTTTGAGTGTTTTCTCAGTCGTCTCAATTTTTTGGTAACCACCAAAGTATAACACTGAGATTTCTCCCCGCCCCCCTCcctctttttttcattttattttggttctttctattttcttatttttatgtgaTGTTCTAATCTTAACAGAAGTGCAAGCCTAGCCTCAAACTACACGTAGCACTGTGTAGTTTGGTTTGTAGATACCCTTGAATAAATTCACACTAGCCCAAGTAGAGATTTTGTGACACACCTGAACAACTCGATTCCCCCAGTGAATTTGTCTTTGCATTGAGCGTTTCATTTGGAAGGGCCCGCATCCCTTTGCAAAGACAGTGGAAGCCCCTTCTGGTGAATTGTGAGAGCGTTTTCACAATGTTGTTACCTTCCCTTCCTGAAATTCCCAGTTTTTTGGGAAGTCAAAAAGTGGTCCCTTGCTGTCTGATATGACTGTGGTCTTGGTGTTTAAAAGATTAGGCAAAGCTCTTCACTCCAATCATGACTCTTTAACCCATGTACAACTTCTGTATTCCCCTCAAAACATAGAATTCAGGGTTGAAAACCACTAAGCCCCTTGAGGCTTAGGTCGATTGGTTTAGTTCCTCCTTTTTGCAGACTGAGTAGACGTCAAGGGCCAGTATCTGCAAACCTTTAGTGCTCCCCTGTCTCTCGGCACCTTCTCTCTCGCTGTGTTGCTGTTGGAATAATCAGTTCCTGGCAGGGTGATCACTAAATCCCTGGCTGAGACTGTAATGGGTAACCCCCGGTTCACTGCTGTCCTCCACAGCAGATCTGGGACAATGACGCTTGCATTGTATTCAAATGAGCTGACTGTTTTTAAAACCTGACTTAAAAGGGTTTTgtgatgcattattttaagGTGCTTTAATGCATTGCTGTTTTCCAGCTAAAATGGGTTTGCTTTGGTTTGCAAGTTTTACTTATTATGGTACATCTTAGCAGAAACAAAAGGACTCCCTAGATTTGTCAGTTTTGGCCAAGTGTTTTTGAGCACCAGTTATAATGCAGGGACCCAGTTAAGTTAAGATGATCACAGCTGTTGGTTGTTATTTCGTGGAGACTTTTAATCTTCAGGGTGTGAGGAACGATTGCTTTGAATGTAGATCCAGTTGAAATAAGGAAATGGTCATtagagattaattaaaatatgatgacCGTCATCAGTACTGCCAACAATGAGCCACTTATTAAGAGCATCTACTCTCTaatttgaattacagtaatttgcACTGCATTCCagatctgtctctctgttgggggaatttttttgttttgttttaattgctattgtgtgtcttttaaatactgtattccAGCCTGTGTGTACTTCTAAATACATTAACAGATGCtgtgttaaagaaaacaaacactggaacTCTTACCATTTCAGAAAGTATTTTTAAGTAGCTTTTTACAGTTACAGCACTAACACTAAACTGAGCAACTACATTAATTTTTCCGATCGTTACCACTCTCCAGCCATGTGAAATGGTGCTTTCTGGGTTGTTCAGTACCATTTAGTATTGGAATTTATCTCCCACTGACATTGttattaggaaataacactgcTGTAATTTGCCATTTATCCACAGTGttaacagcttaaaaaaaaatgtctgtgattGCTATAGCCGCACGCATGACGCTGAGCATTTTATTTGTTGCTTGAGTCTGTGTCCCACTTAATAACCAAGTTCTTTTCGGTTTTATTtcgtttttgttagttttgtttttattttttttaatttaattttttattaaagtcaatgttctattttaaaatcaatccttCTTTTTCATGCCCATCCCTTTGCACCTGGAGTGCCCAAACGTGATGTCCAGTAAGGGTGTCTTCCATAGTGAACAGTTACTGAACTAACGTCTCATGCAAGACAGCCAATTAGGAACTAACAGCCCACCTGGCAATTATGTCCCATAAACTGAAACCATGGCCTGTTGTTCATTTTGTAGCACATTTGCttgtttaatgctttttaagCTATCGGAGTGAGAGCATCTCTTTAATATCACTTGGCCCAAATTCTTCTGACCAATGAGCTTGCTGGATTTCGCTGATCATTATATATAGGGGCTCAGTATATTGTGGACTAGCAAACAGTGACAGGAGAAAGGGAGTGTGTCTggatataatattataatgagGGAATTATCAGTATTCAGCATTTAGTGTCTCATTCTCTTGTAAAGTTACCTGTTTTTCAGAGCAGACAGTGAGTTTGGATGTTGCAGCTATTTTGGAAAGTCGACTTGGTTATAAAAATGACTAAACTAGCCAGCttcctgtttaaaaaatgaaaaaactccTTTTCTTGTGTGAGGAAGCAATTTTGGATTTTCCATTGGTAATGTATGCATAGGTAGTTGACCAGGCCTGGCTTTAGATTTGGCCCCTTCACTGCAATCGAAGGAGAAACAGTGGGATCCTACATGTTATTTTTGGGCTTCGTTCCTGACCGGCTGACATTTTCAGAGCTTGTGAATAGATATCCTCAGCACAAGAACAGGAATCATGGACAAATCGTGTCTTTTGCACGCCCAGATTGTAACCACTTGATCCAGACAGCTTAAttggatttttgttgttcttaaagTTAATGATCAGTTTTCTCCTTTGCTGgacaaatctaatttaaatctCACAAACTCCAGGTGGAGCTAGGGTAGATGAGCAGTGACCCAGATGAGTTCCCAAGAGCTGACTTGTTTCCAATCTTGGTaatccccaaccccccccacctaCAGTCCAACCCCAATTTCCATTCCTCTGCACCACAGAAAACATAATATGCGGTTTTGTTTCGGTCAAATGTAGAACCAATACAGGCCTTATAAATCTATAGcagtaaatgaaaatataacgTTACTGTGCTAATGTTAGTTATGTAATATTAAACGCATAATATTAGCACATCGTACATAACAAATACCTTGACTTTTGTTTACTCTGGTGGTAGTTACTGCTGTGTGTAAAAGTTGACTCAAGGTTTCCTGGGGCTGGACTGGAGGGTGTCATTTAGCAACCCCATACCCTAGTTGAAATGAAGCAGGATGTTGTGAAGGAACCATTACATGACCTTTCTCATGCAAGTCTTTTCCCCGTGTTTTAAGAGGAGCCTCTAAACTAGAATCCCTGTACATTCAATAAGAATGTAATCGAAGAGCAGCACCCATCCAGCCTTACAGCATTTGAGCTCTTGTTTTTGAAGTGTGAAATCCAAAAAATAAAGGATCAAGAACCACTCCAACTAAAtgttaatgtataaaatatggtcCTATTGTTTCTATAACCTTCTTTAGACATCTATAATTTTCTTGTGTAAGAATCAACATGCCCATtatgcaatgtaaaaaaaaaaaaaatgaaataaaaatgtgaagcACATTATTGTACAATCAAACACTTGTCCCATTCAGGGTtgtgaatagaagaaaaaagtgATCTTGGAAGGAGGCTGTTTGCTGTGCCTATTTATAAACTGATGTCTGTGCTGAACTACTGTATGCTACTCTTGTTTGGGGTATGCAGCTCCTGATGCTACTGGAGTATGTCAATATCATTCTTTGCTCTGCCTGACCCCCACCGTTGTCATACTGTGAGGTTCATCATTGACTGGTTGACTGACTGCCAGGCCTGAGTTGAcctaaataaaagcagttgctGCGAATCATACTAATTCATTTCAAAAACGC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006906 vesicle fusion biological_process
GO:0048193 Golgi vesicle transport biological_process
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08498 STX6; syntaxin 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180381 lncRNA downstream 9727 4187958 ~ 4191281 (-) True G143430
TU180353 lncRNA downstream 92152 4107519 ~ 4108856 (-) True G143406
TU180346 lncRNA downstream 102592 4094650 ~ 4098416 (-) True G143400
TU180342 lncRNA downstream 112015 4085446 ~ 4088993 (-) True G143396
TU180317 lncRNA downstream 228463 3972316 ~ 3972545 (-) True G143372
TU180501 lncRNA upstream 573697 4791690 ~ 4858146 (-) True G143528
TU180512 lncRNA upstream 767395 4985388 ~ 4985694 (-) True G143539
TU180521 lncRNA upstream 798854 5016847 ~ 5017631 (-) True G143544
TU180607 lncRNA upstream 1109722 5327715 ~ 5402341 (-) True G143619
TU180787 lncRNA upstream 2370158 6588151 ~ 6588746 (-) True G143759
AMCG00004820 mRNA downstream 51007 4133709 ~ 4150001 (-) True AMCG00004820
AMCG00004819 mRNA downstream 86815 4109082 ~ 4114193 (-) True AMCG00004819
AMCG00004812 mRNA downstream 266003 3932126 ~ 3935005 (-) True AMCG00004812
AMCG00004811 mRNA downstream 286047 3908147 ~ 3914961 (-) True AMCG00004811
AMCG00004808 mRNA downstream 336929 3856496 ~ 3864079 (-) True AMCG00004808
AMCG00004824 mRNA upstream 106970 4324963 ~ 4359936 (-) True AMCG00004824
AMCG00004829 mRNA upstream 221547 4439540 ~ 4482780 (-) True AMCG00004829
AMCG00004828 mRNA upstream 358423 4576416 ~ 4591430 (-) True AMCG00004828
AMCG00004830 mRNA upstream 459480 4677473 ~ 4686323 (-) True AMCG00004830
AMCG00004831 mRNA upstream 489099 4707092 ~ 4726469 (-) True AMCG00004831
TU180357 other downstream 84594 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 1000841 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 1040335 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 1491004 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 3554629 644004 ~ 646379 (-) True AMCG00004763
TU180667 other upstream 1518816 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 4135996 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 4618367 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 4654892 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 7936132 12154125 ~ 12156378 (-) False AMCG00005011

Expression Profile