RNA id: AMCG00004829


Basic Information

Item Value
RNA id AMCG00004829
length 537
RNA type mRNA
GC content 0.57
exon number 7
gene id AMCG00004829
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4439540 ~ 4482780 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCTCTTATGACCAATTGAACAGTGTcctgcctgagagagaggatggagagggggaggaaacCCCTGCCTTCAGCCACTGGGGACCACCAAGGAGGGTGGAGGTGTGGCATGAGCCGTCAGAGTCTCTGGGCATCAGTATCGTTGGTGGCCGCACCGTCATCAAGAAGCTGAAGAATGGAGAGGAGCTGAAAGGCATCTTCATCAAGCAGGTCTTGGAGGACAGTCCAGCTGGCAGGACCCAAGCCCTGAAAACTGGAGACAAAATACTGGAGGTCTCCGGAGTGGACCTCCAGAATGCCTGCCACGAGGAAGCGGTGCAAGCCATCAAGAGAGCTGGGAACCCCGTCCTCTTTATCGTCCAGAGCCTCTCGGCAACACCACGGAAGCCCACTACGACAGGTGCCCCTCCCCCCATGAGACTTCCCCCACCGTACAGGGAGCCTGTGGTGGAGACGCAGGACAGGGATCAGGAGCTGGCCAGACCCAGGGAAACCTGCTTAGATATTAAAGAGGATTTGAGGCACTGgttaTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180381 lncRNA downstream 248259 4187958 ~ 4191281 (-) True G143430
TU180353 lncRNA downstream 330684 4107519 ~ 4108856 (-) True G143406
TU180346 lncRNA downstream 341124 4094650 ~ 4098416 (-) True G143400
TU180342 lncRNA downstream 350547 4085446 ~ 4088993 (-) True G143396
TU180317 lncRNA downstream 466995 3972316 ~ 3972545 (-) True G143372
TU180501 lncRNA upstream 308910 4791690 ~ 4858146 (-) True G143528
TU180512 lncRNA upstream 502608 4985388 ~ 4985694 (-) True G143539
TU180521 lncRNA upstream 534067 5016847 ~ 5017631 (-) True G143544
TU180607 lncRNA upstream 844935 5327715 ~ 5402341 (-) True G143619
TU180787 lncRNA upstream 2105371 6588151 ~ 6588746 (-) True G143759
AMCG00004824 mRNA downstream 79604 4324963 ~ 4359936 (-) True AMCG00004824
AMCG00004823 mRNA downstream 221547 4201008 ~ 4217993 (-) True AMCG00004823
AMCG00004820 mRNA downstream 289539 4133709 ~ 4150001 (-) True AMCG00004820
AMCG00004819 mRNA downstream 325347 4109082 ~ 4114193 (-) True AMCG00004819
AMCG00004812 mRNA downstream 504535 3932126 ~ 3935005 (-) True AMCG00004812
AMCG00004828 mRNA upstream 93636 4576416 ~ 4591430 (-) True AMCG00004828
AMCG00004830 mRNA upstream 194693 4677473 ~ 4686323 (-) True AMCG00004830
AMCG00004831 mRNA upstream 224312 4707092 ~ 4726469 (-) True AMCG00004831
AMCG00004832 mRNA upstream 349621 4832401 ~ 4834300 (-) True AMCG00004832
AMCG00004836 mRNA upstream 586475 5069255 ~ 5094212 (-) True AMCG00004836
TU180357 other downstream 323126 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 1239373 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 1278867 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 1729536 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 3793161 644004 ~ 646379 (-) True AMCG00004763
TU180667 other upstream 1254029 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 3871209 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 4353580 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 4390105 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 7671345 12154125 ~ 12156378 (-) False AMCG00005011

Expression Profile