RNA id: AMCG00004835


Basic Information

Item Value
RNA id AMCG00004835
length 345
RNA type mRNA
GC content 0.49
exon number 3
gene id AMCG00004835
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5154598 ~ 5158802 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCTATTCTGTGTACGATGAGGAAATCGGCTACTGTCAAGGACAGTCTTTCCTTGCTGCCGTGCTGCTGCTTCATATGCCAGAGGAGCAGGCCTTCTGCGTGTTGGTGAAGATCATGTATGAGTATGGCCTGAGACAGCTCTACAAGAACAACTTTGAAGATCTGCACTGTAAGTTCTACCAGCTGGAGAGGCTAGTGCAGGAGCAGCTTCCTGACCTATATAATCACTTTATGGATCTCAATCTGGAAGCCCACATGTACGCCTCCCAGTGGTTCCTCACTCTCTTCACCGCCAAGTTTCCTCTCTGTATGGTCTTCCACATTACTGACCTGTTGCTTTGTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180521 lncRNA downstream 136967 5016847 ~ 5017631 (-) True G143544
TU180512 lncRNA downstream 168904 4985388 ~ 4985694 (-) True G143539
TU180501 lncRNA downstream 296452 4791690 ~ 4858146 (-) True G143528
TU180381 lncRNA downstream 963317 4187958 ~ 4191281 (-) True G143430
TU180353 lncRNA downstream 1045742 4107519 ~ 4108856 (-) True G143406
TU180607 lncRNA upstream 168913 5327715 ~ 5402341 (-) True G143619
TU180787 lncRNA upstream 1429349 6588151 ~ 6588746 (-) True G143759
TU180799 lncRNA upstream 1475918 6634720 ~ 6634963 (-) True G143771
TU180801 lncRNA upstream 1476256 6635058 ~ 6635410 (-) True G143773
TU180810 lncRNA upstream 1637131 6795933 ~ 6796223 (-) True G143782
AMCG00004836 mRNA downstream 60386 5069255 ~ 5094212 (-) True AMCG00004836
AMCG00004832 mRNA downstream 320298 4832401 ~ 4834300 (-) True AMCG00004832
AMCG00004831 mRNA downstream 428129 4707092 ~ 4726469 (-) True AMCG00004831
AMCG00004830 mRNA downstream 468275 4677473 ~ 4686323 (-) True AMCG00004830
AMCG00004828 mRNA downstream 563168 4576416 ~ 4591430 (-) True AMCG00004828
AMCG00004837 mRNA upstream 55526 5214328 ~ 5215407 (-) True AMCG00004837
AMCG00004838 mRNA upstream 83228 5242030 ~ 5258280 (-) True AMCG00004838
AMCG00004842 mRNA upstream 130016 5288818 ~ 5291353 (-) True AMCG00004842
AMCG00004840 mRNA upstream 186573 5345375 ~ 5359669 (-) True AMCG00004840
AMCG00004841 mRNA upstream 208862 5367664 ~ 5380508 (-) True AMCG00004841
TU180357 other downstream 1038184 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 1954431 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 1993925 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 2444594 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 4508219 644004 ~ 646379 (-) True AMCG00004763
TU180667 other upstream 578007 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 3195187 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 3677558 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 3714083 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 6995323 12154125 ~ 12156378 (-) False AMCG00005011

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003801 True 7089 mRNA 0.43 24 NC_007121.7 9697097 ~ 9810597 (+)
grasscarp (Ctenopharyngodon idella) CI01000304_05639043_05676092.mRNA True 3934 mRNA 0.49 15 CI01000304 5638078 ~ 5676391 (-)