RNA id: AMCG00004840


Basic Information

Item Value
RNA id AMCG00004840
length 5545
RNA type mRNA
GC content 0.46
exon number 17
gene id AMCG00004840
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5345375 ~ 5359669 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGCAGCTCGTGTTGTGCTCAGAGCCGGACCCAGCGAAACGTGCGTCCAGTCCCACTTTACTGCCACATAGTTTTAAGAGCAGCCAACTTTATACACAGGTACAACTAAAATAATCGGAAAACCGATGGCTGTGAAATAAGGGTTGAAATCATGTGTTGCCTTCAGTCTTAATTTTGAAGTTCAATTTCTAAAATCGACATTTTGAGCTCAGGTGGGGTCTGGACACGTGTCGGGTGTGGGGGAAGCTGTATCATTAAGGATAATGAGTCAGGAGCAGTTGCTGGATGCCCTGAAGATAGAGGTGCGTTCTCTGTTGATGTCCTCCAAGACGGGCCTGGCTCCTGAGCAGCTTAGGCGAGACTACATGGCGATGGTGGGCCACTCGCTCCCGCTGCGGGCGCTGGGCTTCCGCAACATCATGGACATGGTGGTGGAAATGACAGACGTGATCCGCGTGGGGTACGCCAGTGATGGCAGCATGCTGCTGAGAGCCATTGCGGACGAAAGCACCAGAGGCATAGAGGAGCTGGTGGCCAGACAGAAGACTTCCAAGACGCAGTTTCCAGCGAAGAAAAAATACCACCCAGTGGTTAGGGCTCCTTTGCTGCTGCCCAGAAGAGGCcaacctcccccctccctccctgccgCCCTGCGTAGTGAGCTGAGGCAGCTCCTGGCCAGCGGGCCCCTCCTTGTCTCCGAGCTGGAGTCCCGTTTCGCCAAGAGGTTCGGCCGCCCACTGCAGGTCACCCACTATGGCTTCAACTCCATCGCCGAGATGCTGAGAGCGTCGGCGGACATTGTGGCTGTGGAGCAGAGCCGGGCCGGGTCCCTGCTAACGCTGAAAAGCAGTGAGGCTCCAACACGAGCTGGTCTGCAGGCCCCACAGAACCCAGTTCCAGTGAAAATCGGCACCAACAGAGTGACGCAGAATATTCcgcaatctgtgtgtgtgtcaccttTGAAAAAACTAATGTCCCCCATAAAAATGGAAACGGTAAAGCGTGAATCCATTATGTTTGAGCCGCATGGCACCCCCTTGACTGAGAAGACATCTAGTGAGCCCAAGCTTTGCTCAGAAGAAAAAGACtttgagaaatgtattaaaaagCTGGAGGAAGAGTTGAAGAGCAAAATCCTGGATTGTGGGCCTGCAGGAACGGTCAGCCCAGAACTGAAGGAAAGACTTCGACTGCTTGTCTCCCAAAAGCCAGAAGGTATTTTAGTGAAGAACCTCCCTGAAGCATTCAAGAAAATGTTTGGGGTTGATCTGCCAGTGACTCAGTGTGGCTTCCTGAGCGTCACAGACCTGGTGAGCGCCCTGAGTGACACGCTGTACCTTGACCTCGATGAAGGGAAGACTAATAACAACTGGATAGTGATGGACATCAAGCAAAAGGAAATTCTAAAGCAAACAAAGCTCAGGGAAGGATCCCCTGCTCCTGCGTCATCCCAACCCCTGGATCTCTCGGGCAAAAGCTACAATTCCGGTTGCGAGGTTTCCGAGTGGGAGAGGAAAGAACGGGAGGAGCACAAAACGACAGGCTCTGATGAATTTGAAAAGGGCGACAAAGTTGTAAGCAAGACCTTCCAACAAACCCTTGCAATGCAGCAGTCAATAGCCTCCAAGATGGATGCATACATCGTACCCCCCGATGCCGTGCAGTGGGGCAGTCTGCGGCCTGCTGCCCAGAGAAAGGAGAGGTCGTTCGTGTCTGTTCTGGTGGAGAAGGTGGTGTCCCCCAGCCAGTTCTACATTCGCTTCATTGAGACCCAGGAGTCCAGGGCGCTGGAGGACATGATGATCGAAATGAGGCGAGTGACGATAGGCTGTTACTCATGTCCTGAGGTGTTGGATCGCTACCACCTGCCTGGGTTTTTTGTGCGTGTGGGCCAGGTTTGCTGTGTGGCCCCCAGGGGCATGTGGATGTACCGGGTGGTCATTCATCGGGTGGTCAGCGATCTCACTGTGGAGGTGTACTACGTGGACTTTGGAGATGTGAGCTGCGTGGAGAGGAGCAGATTGAAGTTCCTCAAGTCTTGCTATTCAAAGCTTCCTGCCCAGGCTGTCCCTTCAACACTCACGTGGATAAAACCTTTTCAGAGCACGTGGAGTGAAGCAGCTATCAAGCACTTTCAGAAGCTATGCTGTGAAAGGCCCCTGGTTGCTGTGATACTCAAGTACGTCAAGGGAGTCCTGCACCTGTTCCTGTGCGACACTTACACGGAGGAAGACGTTTATATCCACAATGTCCTGCAGATACTAGGCTATGCTGTGCCCTGCAGCATCAGGGACATCGCAGAGACCTTCAGGCAGTTCAACCCAGTCTCTCTGTACTTGAGGGAGAGAGCACTGAGCGGACAGTCTCCGTCAGACAGGCCGGTCAGCGAGAGTCCAAAAGAACAGATCTTTAATGGCTCCCACAACAGGCTGGCCCACAACCAGCAGAGCAGTAGTTTGGTCTTGTTGCAGCTGCGGCCCTATGACAGGGAACCCCATGGCCTGAACTCTCACAGCTCTGCGGCGTGGAAAGAGGAGCTGGACTTCCAGGACCTCCCAGGACTGGAATTTGATCCATTGTTGGATAGCAGTTGCCAAAGCCAGGGAGTGAACACGGGTAACCCTTTCAGCGCCCAGCTTTGGCCAGATCCCATCTCCAGCAGTGGCTGGGATGAAGGCTGGACCCCTGACAACTCTATTGAAACCACAGCAACCCAGGCGACACCTTGCAGCAACAGGGACACATTGGAGGTGCCCGCTGCATTCACAAAGACCTCGGAGACCATGGCTGTGATGGGCACGCCACTGACTGAGCTCCATAAACAAGCAGACTTCTCCTGCTTGCTGAAGGATTCGGGAGGCGACACCCTGCTTCCTCCCCACACTTTCCAGCAGCGGATTTCTGGCCTTATGTTCCCTTTGTTCAGGGGTGATGGGTTTAATGCGGACAAGTGCTGCCTGCCCCAGACCTCCCCTTCTGCTGTGCTGGGACCAGCTGCCCGCCTGGCCACCGCATCCAACCTCCTGGACTGGTACTCCTATGAGAAGGCATAGACCTTGGCACGGACATTCATATTGTTCACAGTCTTAGTTCGAGACCCAATTCCTTCTATAAATCCAAACAACAAGCCACTGAATTCAAAATGTCCCCCCGTGCTTTGTCTTGAAGAGAAGTGTGAGACGATGGACAGCTGAGGTGTGAGCTGAAACCGCTGTGTGGTTCTTCAGGTAAAATCGCAAGGCTTTCGTTCATATTTCTTATTAATCAAATTCAGTAttcctgttttttcctttgCCAGTTGTCTGCTGACATTGAAAATGGTAACCGGACCAGATGCTCTGTATATTACTACAGATGACCTGAATGGAAATGTCCCCAAATATTCTTGTATCTTTGTCCTCTTTCccatttttgtttagtttgtccGATCAATGATCAGGTGACTCCGGAACTGGTACATCATGGGGTCAAATGGGGGGCTTCTTATTTAATAAATCccaaatataaacagatatTACATTGCATTGGAAACAACTGTAATGTTGACCATCGTTCAGCAGGTTTCTACATTTTCAAATCATACTTGAATAAAGTATAACAAATATGCGTACTTCCACACATGAATCATTTGAGGGCAGTGTCCGGAGCCTCCTGCTGTAAAAGTGAGCGTGCGCTCTGTTTGCCAAGCGTCTGCGGTGAGGCCTGACAGACGCCATCCCAGCTGAAGTGACAGCCCCGTGGGTTCAGCAGTTTTGGTACCTTCAGCGGCTCTGGCCATTGAAGTGGAAAGatcctgaaactgaaactgaacgGAGCTGAAACCCATCCTGGCTCTTCCTGGCAGACACATGGGTAGCACTATCATGGCATGACTAGCTGGCACACTAATGAGGTGAATTTCAGAGTTTTGTGCTCCACTTCCCCAAAAAATTGCTCCCCCAGTTTTTGGGAAAGTATAATATCTCATACTGAGCCTGTCTCTCTAAGGCAATTGTATGACAGCTAGTTTTCAGTATGTCAGTCccagcaaaagcaaaaaagccGAAGCTTAACAGTATCTGAAGAAAAActgcaacagttttttttataactgttcaattctagatttttttttttctcatataaGGATGCTAATACATCCTTGCATCATTCAAAAGTGTAGTTTATCAGCTTTATTATGAAACCACTAGATTCCATTGAGAAAAATGTGCGCTTATCGATTAATCAGACTAGCAGCCTGATTGATATACCATTTCAGTTGCTGTCTTGGATTTgattttatgattatatttcagGTGGTCTGTGTTAATCAGGCTTCTGTGACCATAAACCTGCCTTCCTCGTCTTTAGGGTGTAGTCCTATAGGAATGATTGCCCATAGCACTTTAACTGTGTTGCCAACCATGTCTGCCCTTAGAAATGAAGTTAGTCACTTTTCCTGGGCTTAATATCTGATCTACTTACTCCCATAGAACAGTAGAAAAGGTCAATTTTATGAGATAATGTCTTGTATCTGAAAGTTCCTCATACCTACCACTCATTTGGTTTGTTTACTAAGTTGGGTgaattgaaatatgcattttaattggttttctaACCAGTTTTCTATTATTTGCATAGGAATCAGAAACCCCTTTTTGGCTTTATTAAGgatgcatttctctctcttaatTTGGTAGTGGAAAGtcacatttaatttggttttattaacTCAAATAACTTTTCAGATGTATAGAAGATGAGAAAATATGGAAGACCATGTTGTCTGCATCTATTGTACATCTATATTAGTAGCAGATCACAGTAAATATGATGTATTCTTTAAAGTAGATAGTTCAATTTCTCTTTTGCATACTTTTGAATTCTGCATACGGGGCAGCcaagtatatatttaacagtCAAATGGAACCATTGCTTTTCTTATTTCTAGTTAAGATACTGTGGTACTGTCCTCTTCTTCGCttgtataattttgtttctcacTCCAGCTTAAGAGGAAAAACGCACCCATTACCAGAGAGAGACGCAAATCAAGGGCTTCTGGGGAAACACAGACTGGGTGTTTTATTCATTCCTTTATTGTAAATGAAAGAGTTCCACTTTTAATTAGGCCCTAAGTGTTAATTAGATAAACAAATGAGAGGTAGGTATTTGTTTTCTACCGGTTTGTAATTCAATTCCTTGTTTTGACAGCTGTTCTCTGGAACAGTTTTCATTTACTTAAATGGtatttctgacttttttttaagtatattttcaAGTAATTAGGGGggaaatgtttgatttgtgaataattacaaatatcCTGATGTAACTTCAAATGATCACGTCAAATGTTTATTGTGTCAGTGTCTTTGTTGTGTAAATAGTTCTATTAtacataaacttttatttttgcttacAAAGACGGACAAATATGActtgttgaaatgtatttattttacgtTCTCAATAAACAATGTCTCATTGACATGCCAAAGGTTTTACTCCTCTTTGTtgctacaaaatatatttaaagatcagtttttaaaataaccttaaG

Function

GO:

id name namespace
GO:0007276 gamete generation biological_process
GO:0009987 cellular process biological_process

KEGG:

id description
K18407 TDRD5; tudor domain-containing protein 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180521 lncRNA downstream 327744 5016847 ~ 5017631 (-) True G143544
TU180512 lncRNA downstream 359681 4985388 ~ 4985694 (-) True G143539
TU180501 lncRNA downstream 487229 4791690 ~ 4858146 (-) True G143528
TU180381 lncRNA downstream 1154094 4187958 ~ 4191281 (-) True G143430
TU180353 lncRNA downstream 1236519 4107519 ~ 4108856 (-) True G143406
TU180787 lncRNA upstream 1228482 6588151 ~ 6588746 (-) True G143759
TU180799 lncRNA upstream 1275051 6634720 ~ 6634963 (-) True G143771
TU180801 lncRNA upstream 1275389 6635058 ~ 6635410 (-) True G143773
TU180810 lncRNA upstream 1436264 6795933 ~ 6796223 (-) True G143782
TU180876 lncRNA upstream 2246371 7606040 ~ 7666482 (-) False G143834
AMCG00004842 mRNA downstream 54022 5288818 ~ 5291353 (-) True AMCG00004842
AMCG00004838 mRNA downstream 87095 5242030 ~ 5258280 (-) True AMCG00004838
AMCG00004837 mRNA downstream 129968 5214328 ~ 5215407 (-) True AMCG00004837
AMCG00004835 mRNA downstream 186573 5154598 ~ 5158802 (-) True AMCG00004835
AMCG00004836 mRNA downstream 251163 5069255 ~ 5094212 (-) True AMCG00004836
AMCG00004841 mRNA upstream 7995 5367664 ~ 5380508 (-) True AMCG00004841
AMCG00004844 mRNA upstream 22484 5382153 ~ 5397343 (-) True AMCG00004844
AMCG00004843 mRNA upstream 40539 5400208 ~ 5412801 (-) True AMCG00004843
AMCG00004848 mRNA upstream 355281 5714950 ~ 5730640 (-) True AMCG00004848
AMCG00004853 mRNA upstream 550545 5910214 ~ 5914976 (-) True AMCG00004853
TU180357 other downstream 1228961 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 2145208 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 2184702 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 2635371 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 4698996 644004 ~ 646379 (-) True AMCG00004763
TU180667 other upstream 377140 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 2994320 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 3476691 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 3513216 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 6794456 12154125 ~ 12156378 (-) False AMCG00005011

Expression Profile