RNA id: AMCG00004841


Basic Information

Item Value
RNA id AMCG00004841
length 3122
RNA type mRNA
GC content 0.53
exon number 26
gene id AMCG00004841
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5367664 ~ 5380508 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGGAAAAGAGAGGAGGGAAGCGCTGCTTTAGTTAGCTTGCAGGTTGTCTCCGATGTCCGTCATGCAGCCGCCGGCGGACACTCCGCCAGAGCAGCGCATCATGATCACGCATCTGCCCGGGACAGAGGGCCAGGACAGGGATCTAAAGGAAAACATTGGATCAGTTGTACCAGCAAAGATCCTGAGTGCAGCCCTGCAGGACGAGTTCATCCCAGAGGAGATTCTGATGACCCTCACCTCCGTGGTCCATCCCGTCAGTCCTGTGGAAAGACTGGGACCCCCCAAGATCTCAAAAACACCTAAGGATTTCAAGGGCCACATTCTGCGAGGGACGGACCCGGTCTGGCATCATCCTGTCCGCCGTAACAAATTCAAGTACTTCATAGACCAACCCACTTCACTGACAGGCGCTGGAAGGGATATCTCCTTCCTGTGCGATGCAGTTTTAAGGACAGAGAAGGACAAGCCACTTCTGCCTCCCACTTCAGACAGGAGCAGTGTGCATGGCCAGCAAGAGGGCCTTCACAAGgACTTCCATCTGACAGAAAGTTTGATTCCAGAGGAGTATCACATTGTGAAGAACAAAGGAGTGCTGGGACTGGAGTACTACGAGGATAAATACACAGTCCTATTAGAAGATGAGGAGAAAAAGCTCAGAGTGTTTCCATCAATGAAGCCCAGTGGAAGGTTTGAGGCTATCCAGTTGATGAAGATGCACAGCCTCTTAGAGCTGGTGAAGAAGGAGCAGAGCATCTACAACGTTGTCTTCCACGAGCTCATTCGCCAGGTCTCGGTGGAGTGCGCTGAGCGAGGGGAGCTGCTGTCTAAACTCAGGCAGAGATATGTTTTGCTCATGGACCGGATTCCTCGGCAGCTCAAGAGCCTCCATACTGAGACCCTGGCACAGAGGGCACTAGACCGGCGTCTCACTGAGGAGATCATCGGCTTCAAAGGCTCCGTTGGGAAGCTCAACAATGAGCTGGTCCAGGTGAGAGAACATGACCTGCGAGTGTCCAGGGCAGCCGAGAGAGCCCAGGAGGAGCTAGCCAGAGCTCTACAGCAGTCCCAGAAGAACGCAGATCTAGTTGGAGAGTATCATGACCTGTATGAGCTGCAGAGGCGCAGACTGGAGAGTCAGCTGGCTCGAGTCACTGAAGAGAAAGATCTGTGGAGCAGGGTCACTTACCGCCTAGCACTCAAGGTGATTAATGCAAATAACCTTCATATAGCAAGCAAGCTCCAAGTTAGTGAACAAACCTGGGCCAAAGCGGCAGAACATTTTACAGTTCTCCTAAAATCCAAGGACACAGAAGACCTCAGCCAGATTTTGCGACTAGCAGACCACTGGAAAGAAATGGCAGGCCAGTTGTGGCGGGACCTGCACCAGGCAGAGAACTCTGGCTTTGAGAAAGTGAAGCTGGTTGAAGCTGGGATTGCCAAATGGCAGACGTTCTGTGATGACAAAATCCATGCTGACATGGGACCTGAGAAGGACCCAGAGCAGGTTCTGTTTCTGGACTTAAGAGAGTGGGAAGAGATGCTCACAAAGGAATGTGAGCGCTACGGAGGGGAGAGGCTGCTGTCCAATCAGGAGACGCTGAAGACCATGAGTCAGCTGCAGGAGAAGTGGGTGGATGTGGGGCTGCTGCTGTTCAGCCGGCACCTTGGGTCTGATGGGAAGAGTCCTCCGGCCCAGGCAGTGATGATGCAACTGGGCAGAACTCTAGAGAAGCTTCACAAGCAACTAGGGACCAGAATCACCGGAGACAGCGGCATCCACAAGATTCTGATGTCTTTGGTTGGGGAAATGGAATTGTGGTCTGCCAGGCTGAATGCTGTCGGCGGGCATCCAGGCATGCTGCCCCATTCGGACTGGCTGAAGCTAACCAATACCTTGTGTGGTTGGACGACTCTTGTGGAGCAGGCAATGCAGGTTATCAGCTCCAGCCAGCTGGAGAATGAATGGATCAGGCAGATGGCTCACGTGAGGCTAGACATTGAGGAGGTTTGCGTGGCGCTGCAGGAGTTTCTCTCTGTGGCATCGAACACAATTGAATCTGAGAACTCCAGGCTTACAGAGGAGGTCAGTGCCTTACACAGCTCCCTGACCCAGTGGATGGTACAGCTGCTGCTCCAGATGGCGCCTGACTGTGGCGAGGACACACTCCAGCAGCCCCCCGAGAATGAGGCCTCGCAAGCAGTGGCAACTCTCAAGCTGGAAGAAGAGGCAACACATCTCATGCAGAAGCTCGACCACTTCACCAAGCGTCTCACTGGatCCTGCCAGGCCTTTGTGGAGGAAGAGGTTCAGAAACAGATGCACCAAGATGAGCCAGAAGATGGACTGTATGAGCTCCAGAAACTCCAGAGGGAATGCTCGGAGTGGAGCGAGACCTGTCAGATCCTTCTGTCTGAGATGAAAGGGAATCCAGTGGAAGGGCTGACCGCTTCTGCCCAGGCGGTACCGTCAGACACAGACTTACTCTCTGCAGAGCAAAGCGAGGAGTCCTTTatggCAACAGACATCGAGGAGGTACCAAAACCACATGCTGTGGAGGGCTGGAAAGAGGAGTCTGATGACAACACAGCAGTCAAGTCAGCCAAGGACAGTGAGGGAGATTCTATCTTGAGGTTTATAGGTCTTGACGGCAACATCCGAGAGAAGACCCTAAGGGAGGCAACAGTGTCATTGCAGGGAAGCGATGCGGTGGTGGGCCGTCCCAAGACCCCCAGTGCACAGAAAGCGTTTGACGCCCTGGCTGCGGTCGAGGTTCTACATCAGGAGCTCTTgaGTGCTGAGGAGAGAGCTCAAAGGGCTGAGGAGAGAACCCTCAGCACAGAGGAGCAGCTGCACTCGGCTCTGGAGAAGATCCAGGATCTGGAGAGGCAGCTGCAGGGCAGAGCCCGTCTAGAAGAGCCGGAGGAAAAGAAGGTAGTGGCACCCATCAAAGTTCACCCTCCTGAAGAACTGGCAACCGAGAGATCCAAATCCACTCTGAAAAAGTCTGAGAAACACACCAAGAGGTCTTGAGACTCTAACGTCTAAGCTGAACATCCTAGATATATTGTCTTCACCGCAATAAATATGTTTCGGGGtcaaaaattaatattttacaattcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180521 lncRNA downstream 350033 5016847 ~ 5017631 (-) True G143544
TU180512 lncRNA downstream 381970 4985388 ~ 4985694 (-) True G143539
TU180501 lncRNA downstream 509518 4791690 ~ 4858146 (-) True G143528
TU180381 lncRNA downstream 1176383 4187958 ~ 4191281 (-) True G143430
TU180353 lncRNA downstream 1258808 4107519 ~ 4108856 (-) True G143406
TU180787 lncRNA upstream 1207643 6588151 ~ 6588746 (-) True G143759
TU180799 lncRNA upstream 1254212 6634720 ~ 6634963 (-) True G143771
TU180801 lncRNA upstream 1254550 6635058 ~ 6635410 (-) True G143773
TU180810 lncRNA upstream 1415425 6795933 ~ 6796223 (-) True G143782
TU180876 lncRNA upstream 2225532 7606040 ~ 7666482 (-) False G143834
AMCG00004840 mRNA downstream 7995 5345375 ~ 5359669 (-) True AMCG00004840
AMCG00004842 mRNA downstream 76311 5288818 ~ 5291353 (-) True AMCG00004842
AMCG00004838 mRNA downstream 109384 5242030 ~ 5258280 (-) True AMCG00004838
AMCG00004837 mRNA downstream 152257 5214328 ~ 5215407 (-) True AMCG00004837
AMCG00004835 mRNA downstream 208862 5154598 ~ 5158802 (-) True AMCG00004835
AMCG00004844 mRNA upstream 1645 5382153 ~ 5397343 (-) True AMCG00004844
AMCG00004843 mRNA upstream 19700 5400208 ~ 5412801 (-) True AMCG00004843
AMCG00004848 mRNA upstream 334442 5714950 ~ 5730640 (-) True AMCG00004848
AMCG00004853 mRNA upstream 529706 5910214 ~ 5914976 (-) True AMCG00004853
AMCG00004854 mRNA upstream 536258 5916766 ~ 5939825 (-) True AMCG00004854
TU180357 other downstream 1251250 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 2167497 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 2206991 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 2657660 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 4721285 644004 ~ 646379 (-) True AMCG00004763
TU180667 other upstream 356301 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 2973481 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 3455852 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 3492377 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 6773617 12154125 ~ 12156378 (-) False AMCG00005011

Expression Profile