RNA id: AMCG00004842


Basic Information

Item Value
RNA id AMCG00004842
length 456
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00004842
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5288818 ~ 5291353 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACAGCTGGAACTGTTGTTATTACCGGAGGAATACTAGCAACAGTGATACTACTGTGTATCATAGCTGTGCTCTGTTACTGTAGGCTCCAGTCGGATGGCCCAGCCCAGCCACACTTTGCCTGCAACGCATGCAGCGCCTCGGGAGTCGACGGCTCTGCCCTCACCCCTTTGGCCCTGCCCCCTGACCCCTGCCCGCCGGGGggtgccgccgccgccgccactGCTTGCACTGCCTCCCGCAACTACTGCCCCACCTGCTCGCCTTACAGCTCCCCCTTTTACATACGGACCACAGACGAGATGCGCAACGGGGGCGAGAGGATCACCTACATGCCCGCGCACTACGAGAACCCCGCGCTGTCCATCAAAATGTCCTCCCTGCAGAGTTTTCCGATGAGTCGCCAGGGCCAAGACTTTTTCAGCAACACTGGGGCCATCAGTACTGAGGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180521 lncRNA downstream 271187 5016847 ~ 5017631 (-) True G143544
TU180512 lncRNA downstream 303124 4985388 ~ 4985694 (-) True G143539
TU180501 lncRNA downstream 430672 4791690 ~ 4858146 (-) True G143528
TU180381 lncRNA downstream 1097537 4187958 ~ 4191281 (-) True G143430
TU180353 lncRNA downstream 1179962 4107519 ~ 4108856 (-) True G143406
TU180607 lncRNA upstream 36362 5327715 ~ 5402341 (-) True G143619
TU180787 lncRNA upstream 1296798 6588151 ~ 6588746 (-) True G143759
TU180799 lncRNA upstream 1343367 6634720 ~ 6634963 (-) True G143771
TU180801 lncRNA upstream 1343705 6635058 ~ 6635410 (-) True G143773
TU180810 lncRNA upstream 1504580 6795933 ~ 6796223 (-) True G143782
AMCG00004838 mRNA downstream 30538 5242030 ~ 5258280 (-) True AMCG00004838
AMCG00004837 mRNA downstream 73411 5214328 ~ 5215407 (-) True AMCG00004837
AMCG00004835 mRNA downstream 130016 5154598 ~ 5158802 (-) True AMCG00004835
AMCG00004836 mRNA downstream 194606 5069255 ~ 5094212 (-) True AMCG00004836
AMCG00004832 mRNA downstream 454518 4832401 ~ 4834300 (-) True AMCG00004832
AMCG00004840 mRNA upstream 54022 5345375 ~ 5359669 (-) True AMCG00004840
AMCG00004841 mRNA upstream 76311 5367664 ~ 5380508 (-) True AMCG00004841
AMCG00004844 mRNA upstream 90800 5382153 ~ 5397343 (-) True AMCG00004844
AMCG00004843 mRNA upstream 108855 5400208 ~ 5412801 (-) True AMCG00004843
AMCG00004848 mRNA upstream 423597 5714950 ~ 5730640 (-) True AMCG00004848
TU180357 other downstream 1172404 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 2088651 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 2128145 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 2578814 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 4642439 644004 ~ 646379 (-) True AMCG00004763
TU180667 other upstream 445456 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 3062636 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 3545007 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 3581532 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 6862772 12154125 ~ 12156378 (-) False AMCG00005011

Expression Profile