RNA id: AMCG00004843


Basic Information

Item Value
RNA id AMCG00004843
length 1811
RNA type mRNA
GC content 0.44
exon number 5
gene id AMCG00004843
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5400208 ~ 5412801 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCAGCAGCTTGCTGAGACGAGACAGATAGGAGCAGATTGTATGAATTGCATTTGCCAGTCTCCAAAAAGGGAAGGGGGATTTTGATCTTTGGGAAACCGAAGCAGCAGCTGAACGGTAGACATTATTCACGTGAAAAAGAGGGGGACGGTCAATATTAGTCAACAAGACCCTCAGCTCCATTGCAACTCATTCTGGACCCAATCACCAAGGTGCTATTTGGATCACCTGCTAGGTTTGCAATCAGGTTTTGCAGATAAAAAGCTTTGCAAAGGAAGAATATAAGATGGCCAAGGTTGACTCCCGTTTTGGGCAAAAGGACTCATCGGACCAGAATTTTGACTACATGTTCAAGCTGCTCATTATCGGCAATAGCAGCGTGGGCAAGACGAGCTTCCTGTTCCGCTACGCAGATGATTCCTTCAGCAATTCCTTTGTCAGCACCGTGGGCATCGACTTCAAGGTGAAGACGGTGTACCGCAATGACAAGAGAGTCAAGCTGCAGATCTGGGACACGGCTGGGCAGGAGCGTTACAGGACCATTACAACTGCCTATTACAGAGGGGCTATGGGCTTTATCCTCATGTATGATATCTGCAATGAAGAGTCCTTCAATGCAGTGCAAGACTGGGCAACCCAGATCAAGACCTACTCCTGGGATAATGCACAGGTCATCCTGGTGGGGAACAAGTGTGACATGGATGAGGAGAGGGTGGTGCCAGCAGAAAAGGGCAAGCACTTGGCTGACCAACTGGGATTTGAGTACTTTGAGGCCAGTGCCAAGGAGAACATCAACGTGAGACAGGTGTTTGAGCGTCTGGTGGATATTATCTGTGTAAAGATGTCCGAGAGCGTGGATACAGACCCTGCCATGGTCAGTGGCACCAAGAACACCCGGCTGACTGAAAACCCTCCTCCACTACCTCAGAACTGCTCCTGCTAATGACCCCTTCACTCGTCACCCCTCACCTTTCAACCCCAGGTCACAACCACTGTGCTCCACAAGCACAGAAGAGGAAAGCACACTGCCTCTATGGACCCACCATAtccaattttaaagaaaaacattcataacacacttaaaaaaacttGAAGAGATAGTTGCAGTCACTTGCCGATAAATCATTTTCAGCCTAGAGCTCACAATATTCTTGTGGGgatttcagttttagttttttctcaatTGATTCCTTGTTCCCTAGATTACTAGAATCTCTGTGGTTTTcactatttgtgtttttttgggtgTGTGCCTGTTTGCTTAGTTTTCCTTGCACCAGCCTGCACTGACAAGTGAAGGAATTGGAGCCTCCATGTGGCCTCTCCTCAGAGCAGAGGATGACGCCTATCGTCCAGAGATCACTGGTTTGAATCTGAATTATATCATTAGCCTACAATGACTTGAATTCGATTCCCTAAACATTGGGGCAAATTAGGGAAGCACCACCAGAATATGTGGGATCAAAGTGGGCTAGGTTCCTATCTCTCTGGGTACCGTTTTATCAGTGGGAACTAGGCCAGTAGGGgggttatatttaaaatattgcaaaattaacataaaaaacaaagaacataaccgtgtttttataaaaaagcATAGAATTAGCTGTGAGCTCTATCCTGATCAAAAGCACAGGGTCttcaattacataaatatgGATTTCATGTGCTCATGAATGCAACTATCTTTTCAAGGACCACACAATACATAGAATAAAGATTGTTAGTTATGATCAGTATATTGTCATGTATGAGTCCTGTTTAATACGTGATACAATATTGTTGTATGAATCCATATATTTCATAgggaag

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07883 RAB3C; Ras-related protein Rab-3C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180521 lncRNA downstream 382577 5016847 ~ 5017631 (-) True G143544
TU180512 lncRNA downstream 414514 4985388 ~ 4985694 (-) True G143539
TU180501 lncRNA downstream 542062 4791690 ~ 4858146 (-) True G143528
TU180381 lncRNA downstream 1208927 4187958 ~ 4191281 (-) True G143430
TU180353 lncRNA downstream 1291352 4107519 ~ 4108856 (-) True G143406
TU180787 lncRNA upstream 1175350 6588151 ~ 6588746 (-) True G143759
TU180799 lncRNA upstream 1221919 6634720 ~ 6634963 (-) True G143771
TU180801 lncRNA upstream 1222257 6635058 ~ 6635410 (-) True G143773
TU180810 lncRNA upstream 1383132 6795933 ~ 6796223 (-) True G143782
TU180876 lncRNA upstream 2193239 7606040 ~ 7666482 (-) False G143834
AMCG00004844 mRNA downstream 2865 5382153 ~ 5397343 (-) True AMCG00004844
AMCG00004841 mRNA downstream 19700 5367664 ~ 5380508 (-) True AMCG00004841
AMCG00004840 mRNA downstream 40539 5345375 ~ 5359669 (-) True AMCG00004840
AMCG00004842 mRNA downstream 108855 5288818 ~ 5291353 (-) True AMCG00004842
AMCG00004838 mRNA downstream 141928 5242030 ~ 5258280 (-) True AMCG00004838
AMCG00004848 mRNA upstream 302149 5714950 ~ 5730640 (-) True AMCG00004848
AMCG00004853 mRNA upstream 497413 5910214 ~ 5914976 (-) True AMCG00004853
AMCG00004854 mRNA upstream 503965 5916766 ~ 5939825 (-) True AMCG00004854
AMCG00004861 mRNA upstream 834188 6246989 ~ 6341878 (-) True AMCG00004861
AMCG00004858 mRNA upstream 1089687 6502488 ~ 6509316 (-) True AMCG00004858
TU180357 other downstream 1283794 4113747 ~ 4116414 (-) False AMCG00004819
TU180096 other downstream 2200041 3138857 ~ 3200167 (-) False AMCG00004790
TU180095 other downstream 2239535 3138857 ~ 3160673 (-) False AMCG00004790
TU180047 other downstream 2690204 2709554 ~ 2710004 (-) True G143145
TU179730 other downstream 4753829 644004 ~ 646379 (-) True AMCG00004763
TU180667 other upstream 324008 5736809 ~ 5783184 (-) True G143659
TU181155 other upstream 2941188 8353989 ~ 8377001 (-) True G144050
TU181227 other upstream 3423559 8836360 ~ 8840988 (-) False AMCG00004894
TU181238 other upstream 3460084 8872885 ~ 8906594 (-) True G144115
TU182156 other upstream 6741324 12154125 ~ 12156378 (-) False AMCG00005011

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040344 True 5067 mRNA 0.42 4 NC_007133.7 17205608 ~ 17213264 (+)
grasscarp (Ctenopharyngodon idella) CI01000030_01912241_01917759.mRNA True 1672 mRNA 0.40 4 CI01000030 1912241 ~ 1918777 (+)